Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0282 CTCACTCTTGGTGGCGTCGTCTTCTTCTTCTTCTTCTTCTTTCCTGTTCGTGTTGCTTCTAGACGTTTCTGCAATATCTGTATTATTCAAACAATATTTGTTGCCTCAATCTGGCAGGGATCTAAGCCATCTGCCACGATGTATCTTCAGTTTTACATAAACGACAATGGTGACAAGGTCTACACCACTAAGAAAGAAACACCGCTTGGCTTAGCTACACAATCTGCTCACCCTGCTCGGTTTTCACCGGATGACAAATATTCAAGGCAGAGGGTGCTTCTGAAGAAGCGTTTTGGATTATTACCAACCCAGCAACCACCTCCAAAGTATTGA 333 0.4354 LTLGGVVFFFFFFFPVRVASRRFCNICIIQTIFVASIWQGSKPSATMYLQFYINDNGDKVYTTKKETPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0282 110 Pfam Nucleolar RNA-binding protein, Nop10p family 49 98 IPR007264 GO:0001522|GO:0030515|GO:0042254
Amo06g0282 110 SUPERFAMILY Nop10-like SnoRNP 49 104 IPR036756 GO:0001522|GO:0030515|GO:0042254
Amo06g0282 110 Gene3D H/ACA ribonucleoprotein complex, subunit Nop10 56 100 - -
Amo06g0282 110 PANTHER NUCLEOLAR RNA-BINDING NOP10P-LIKE PROTEIN 47 110 - -
Amo06g0282 110 PANTHER RIBOSOME BIOGENESIS PROTEIN NOP10 47 110 IPR007264 GO:0001522|GO:0030515|GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0282 Amo-Chr6 3827376 3828836 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0282 K11130 - twl:120011575 133.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1477 16 26978493 26980005 Amo06g0282 06 3827376 3828836 hybridization