Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0031 ATGGGGGCCAAGCATTTGGCACTGGTTTTCTGTTTATGGGCTGTAACATGTTGTTCACTTCTTCCTTCTTTCTCATTTGGACTTCTGAGAGTTGGTCTGAGCAAAAGGCCTCTTGATCTTCAAAGTATTAATGCYGCTAAAAAGGCGAGAGAAGTCTTAATGTCTGGAAGGCCAATCATGGGTGCATATGAGAAGTATTTTGTTGGGTCAAATGGTGAAGATATAGTACCTTTGAAGAATTACATGGATGCTCAGTATTTTGGCGAGATCGGAATCGGCACACCTCCACAGCCATTTACTGTCATATTTGATACTGGCAGTTCCAACCTTTGGGTTCCATCCTCCAAGTGCTATTTTTCTCTTGCTTGCTATACACACAATTGGTACAAGCCAAAGAAATCTAAAACATACATAAAAAATGGAACATCATGTAAAATAGCCTATGGTACTGGATCAATATCTGGTTTCTTCAGTCAAGATAGTGTTAAAGTCGGTGATGCTGTTGTCAAGAATCAGGATTTCATTGAAGCTACTCGTGAAGGAAGTCTTACCTTTCTGGCAGCGAAGTTTGACGGCATACTTGGGCTTGGATTTCAAGAGATCTCAGTCGAGAAATCRGTGCCAGTATGGTACAAGATGATGGATCAAAATCTTGTCAACGAGAAGGTATTCTCTTTCTGGCTCAGTGGGGATCCAAATGCGAAAAAGGGTGGTGAACTAGTTTTTGGTGGGGTTGACCCTAAGCACTTCAAAGGAGAACACATTTATGTTCCAGTTACTACAAAAGGTTACTGGCAGATTGAGATGGGAGATTTTTATATTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGCGCTGCAATTGTGGACTCTGGAACATCCTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCTATTGGTGCTGAAGGAGTTCTGAGTGTAGAGTGTAAGGAAGTTGTCTCTCAATATGGAGAGTTGATCTGGGATCTTTTAGTGTCAGGGGTACAACCAGGAGAAATATGCTCGCAAGTTGGGTTATGCTCTAGCAAAAAGAGTGTTGGGATTGAGATGGTGACCGAAAAGGTTCAGAGTGAGGTGTCTGCCAAAGATACTCCTTTGTGTTCTTCTTGTCAGATGCTTGTGATTTGGATCCAAAATCAACTAAGTCAAAAGAATACGAAGGATAGAGTATTCAACTATGTAAATCAACTTTGTGAGAGCCTGCCAAGCCCATCTGGAGAGTCAGTGATAAGCTGTGATAGTCTTTCTCGGATGCCAAACATTACCTTTACTATTGGCGATAAACCTTTCGTTCTTACACCAGACCAGTATATCTTGAGAACTGGAGAAGGCATTACAGAGGTCTGCCTTAGTGGGTTTATTGCTCTTGATGTTCCTGCTCCAAGGGGACCTCTCTGGATTCTTGGGGATGTTTTCATGAGGGTCTATCACACTGTCTTTGACTACGGGAATCTCCAAGTTGGTTTTGCTAAATCTGCTTAA 1518 0.4242 MGAKHLALVFCLWAVTCCSLLPSFSFGLLRVGLSKRPLDLQSINAAKKAREVLMSGRPIMGAYEKYFVGSNGEDIVPLKNYMDAQYFGEIGIGTPPQPFTVIFDTGSSNLWVPSSKCYFSLACYTHNWYKPKKSKTYIKNGTSCKIAYGTGSISGFFSQDSVKVGDAVVKNQDFIEATREGSLTFLAAKFDGILGLGFQEISVEKSVPVWYKMMDQNLVNEKVFSFWLSGDPNAKKGGELVFGGVDPKHFKGEHIYVPVTTKGYWQIEMGDFYIGGVSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGELIWDLLVSGVQPGEICSQVGLCSSKKSVGIEMVTEKVQSEVSAKDTPLCSSCQMLVIWIQNQLSQKNTKDRVFNYVNQLCESLPSPSGESVISCDSLSRMPNITFTIGDKPFVLTPDQYILRTGEGITEVCLSGFIALDVPAPRGPLWILGDVFMRVYHTVFDYGNLQVGFAKSA* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0031 505 SMART sapb_4 280 352 IPR008139 -
Amo06g0031 505 Pfam Saposin-like type B, region 1 377 414 IPR007856 GO:0006629
Amo06g0031 505 Pfam Eukaryotic aspartyl protease 85 503 IPR033121 -
Amo06g0031 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 101 112 IPR001969 GO:0004190|GO:0006508
Amo06g0031 505 Gene3D Acid Proteases 245 505 IPR021109 -
Amo06g0031 505 ProSiteProfiles Saposin B type domain profile. 316 356 IPR008139 -
Amo06g0031 505 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 288 299 IPR001969 GO:0004190|GO:0006508
Amo06g0031 505 ProSiteProfiles Peptidase family A1 domain profile. 86 502 IPR033121 -
Amo06g0031 505 SUPERFAMILY Acid proteases 14 504 IPR021109 -
Amo06g0031 505 Gene3D - 316 414 - -
Amo06g0031 505 ProSiteProfiles Saposin B type domain profile. 375 416 IPR008139 -
Amo06g0031 505 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 3 504 - -
Amo06g0031 505 CDD phytepsin 76 503 IPR033869 GO:0004190
Amo06g0031 505 Pfam Saposin-like type B, region 2 320 352 IPR008138 -
Amo06g0031 505 PRINTS Pepsin (A1) aspartic protease family signature 92 112 IPR001461 GO:0004190|GO:0006508
Amo06g0031 505 PRINTS Pepsin (A1) aspartic protease family signature 238 251 IPR001461 GO:0004190|GO:0006508
Amo06g0031 505 PRINTS Pepsin (A1) aspartic protease family signature 288 299 IPR001461 GO:0004190|GO:0006508
Amo06g0031 505 PRINTS Pepsin (A1) aspartic protease family signature 478 493 IPR001461 GO:0004190|GO:0006508
Amo06g0031 505 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 3 504 IPR001461 GO:0004190|GO:0006508
Amo06g0031 505 SUPERFAMILY Saposin 317 414 IPR011001 -
Amo06g0031 505 Gene3D Acid Proteases 29 244 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0031 Amo-Chr6 345652 349664 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0031 K08245 - gmx:548009 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo06g0031 06 345652 349664 Amo09g0834 09 14750170 14755164 PCT
Amo09g0834 09 14750170 14755164 Amo06g0031 06 345652 349664 PCT