Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2390 ATGGATGAAGAATTGGTTGCTGGGCCCACAGAATTAGAGATTGACGAGGATTCAGAGCACCAGGGCAAAGAAGATAGGTATGCGTTAAACACAAAAATCTTAAAATCTCAAGAAATCCCTAGAGCTGTTAAGGGGGAATATGATGAACTCGTACAAGGTAAAAACGTTGCAGAAGCATCACAGCATCCGCATCAAAGCCTTTTTAGGGATGTTGAAGAATTAACTGTGAAAAGTTACAATAGTTCTACTTTGGATATTGGTACATCCAGCAACCGACAGCAGATTTATAATAATAAGCAGAATCGTTGGCTGAATCTTTCTCAGGTAGGGAGCCATTCAGGGCTTGGAAACGCTGTCCAGGAGGATGCTGATGCTGCTGGGTCCACATCTTTTGCACAGCTACTAGCTAGAAAATCACTCAGTGATGGTCACACCAATGTTATTGAACGCTTGGAAGATTATGAGAATAAAGAGATTGCAGCTGATGTTCATGGACAAATTCGGACGAAAATTATATCCAATTCTGGATTTGCTGAGTATTTCATTAAAAGTACCTTGAAGGGTAAGGGTATCATATGTAGAGGTCCATCTTCTGATGTGCTCGCCGTTCAGTCTAGAGATAAAAATCAGATGAAGACTGGCACTGATACTGATCAGAAACCAAGGAAGACCGCCATTGATATCGGTGAGAATAAGATGAAAGCTGGCATTGGTACAGATCAGTATCAGAAGACTGGCAGCGATAGTCCGTGGAAGTCTACCATATCGGCAAGCTGTGATTCCATAACTGCAAAGTGTCCTTCTTATAGTAGTTCTGTGCATAGACCAGGAGGATTTGGCTATGGTGGTGTAACTTTGAGAGAATGGTTGAAATGTGAACAACACAAAGCAAGCAAAGTGGAGTGTTTGAATTTATTTAGAAAGATTGTGGATTTAGTGGATGATTCTCACTCTCAGGGAACTGCATTGAACAACCTATATCCATCTTACATAAAATTATTACCATCAAACCAAGTCTTGCACATCGGGTTACCTATACAAGAGCAGATGTCAGATAGTGTTGTGAATTCTGAAGTTCTTCACTTAAATGAATCTTTAAGTAGTAAAAGGCTGTCAGAGCAAGTAACATTTCCTTCTCATGACATGGTGTCAAAGAAACAAAAATTTAATGAAGGTGTGAGAATATCTGGGAGTGATTCATGTCTTGAAAATGCCAGTGATAGAAAAGCCCGTACAGTTGGATCACAGGATTATTGCAATGAATATGAAGAGGATATCCAATATTCCAAATATAATATTAGGAGGATGTCTAGCGTCCCTCGCGTATCCAGTGCAGGTCGGTCACTGTTATCTTTAGGTGAAAAATTGGAAGAAAAATGGTATGCAAGTCCTGAGGGGGGATGCACAACATCATCAAATATCTACTGCTTAGGTGTCCTCCTTTTTGAGTTACTCGGCCATTTTGACTCTGAAAGAGCTCGAATTGCAGCAATGTCTGATCTTCAACATAGGATTCTTCCTCCGGTTTTCCTTTCAGAAAATCCTAAGGAAGCTGGCTTTTGTCTCTGGTTGCTGCATCCGGAACCGTCATCACGTCCAACAACTAGGGAAATCCTACAATCTGAAGTGATCAATGGATTGCACGAGTTGTATAATGAGGAGTTGTCATCAAATATTGAACAAGATGATGTAGAATCAGAACTGTTACTGCATTTCCTTGCCTCGTTGAAAGAGAAGAGGCAGAAGGATGCCTCCAAATTAGTAGAAGAAATTAAGTGTTTGGAATCAGATATTGAGGAGGTGGAGAGGAGGCATGACTCTTCGGATCCATCTGACTCACTGAATAATTACTCTTGTCAGAGAAAGATTGGAGAGGAACCTCTTAGTTTAGAAATGCTAAACTCAGTATCCATAATGTCCAATTCAAATGATTTAAGATTGTTGAGAAATATGTGTCATCTTGAAAGTGCTTACTTCTCCTTGAGATCCAAAGTTAGGCCCTATGAAACAGATGCTGCAACTCACCCTTATAATAATTTACTAAGATGCCGTGAGAACTGGCATGTGGCACAAAAAGGTGGGGAACATGCTGAAAAGAAAGATTCTTTAGGAACCTTCTTTGATGGTTTGTGCAAGTATGCACGTTATAGCAAGTTTGAAGTACGGGGTGTACTTAGAAATGCAGATTTTAATAATCCTGCAAATGTAATATGCTCTCTGAGCTTTGATCGGGATGGAGATTACTTTGCTTCCGCTGGAATATCCAAGAAAATAAAAGTCTTTGATTTTAATGCACTTTGCAATGACTCTATTGATATCCATTATCCTGTATTTGAGATGTCAAATGGATCGAAGCTCAGCTGTGTTTGCTGGAATAACTATATCAAGAACTATCTTGCCTCCACAGACTATGATGGTGTAGTGAAGCTATGGGATGCTAGCACAGGTCAAGTGTTCTCTCAGTTAACTGAACATGAGAAAAGGGCATGGTCTGTTGATTTTTCTCCAGTATGCCCAACAAAGTTAGCCAGTGGAAGTGATGATTGCTCTGTCAAACTGTGGAACATCAATGAGAGAAACTCTCTAGGCACAATCGGGAATGTTGCTAATGTCTGCTGTGTTCAATTCTCTGCTCATTCTTCTCACTTGCTGGCTTTTGGATCTGCCGATTACTCTACATATTGCTTTGATATTCGCAATCTTAGAAGTCCCTGGTGTGTATTGGCTGGGCATCGTAAAGCTGTGAGCTATGTCAAATTTTTAGACTCTGGAACACTTGTTTCTGCATCTACTGATAATACATTAAAGATCTGGGATCTCAGTAAAACCTCTCCTGTGGTTCCATCTGCCAGTGCTTGCACCCTAACGTTGTCAGGGCATACTAATGAGAAGAATTTTGTGGGTTTGTCGGTTGCTGATGGATATATTGCATGTGGTTCAGAAACAAATGAGGTTTACTCCTACTATAAATCGCTTCCCATGCCAATCACTTCGCACAAGTTTGGGTCTATTGATCCCATATCTGGTAAGGATACTGATGATGACAATGGCCAGTTTGTTTCAAGTGTGTGCTGGAAAGGGAATTCGGACATGCTTATTGCAGCAAATTCAAGTGGATGTATAAAAGTGTTGCAGATGATTTAA 3144 0.4033 MDEELVAGPTELEIDEDSEHQGKEDRYALNTKILKSQEIPRAVKGEYDELVQGKNVAEASQHPHQSLFRDVEELTVKSYNSSTLDIGTSSNRQQIYNNKQNRWLNLSQVGSHSGLGNAVQEDADAAGSTSFAQLLARKSLSDGHTNVIERLEDYENKEIAADVHGQIRTKIISNSGFAEYFIKSTLKGKGIICRGPSSDVLAVQSRDKNQMKTGTDTDQKPRKTAIDIGENKMKAGIGTDQYQKTGSDSPWKSTISASCDSITAKCPSYSSSVHRPGGFGYGGVTLREWLKCEQHKASKVECLNLFRKIVDLVDDSHSQGTALNNLYPSYIKLLPSNQVLHIGLPIQEQMSDSVVNSEVLHLNESLSSKRLSEQVTFPSHDMVSKKQKFNEGVRISGSDSCLENASDRKARTVGSQDYCNEYEEDIQYSKYNIRRMSSVPRVSSAGRSLLSLGEKLEEKWYASPEGGCTTSSNIYCLGVLLFELLGHFDSERARIAAMSDLQHRILPPVFLSENPKEAGFCLWLLHPEPSSRPTTREILQSEVINGLHELYNEELSSNIEQDDVESELLLHFLASLKEKRQKDASKLVEEIKCLESDIEEVERRHDSSDPSDSLNNYSCQRKIGEEPLSLEMLNSVSIMSNSNDLRLLRNMCHLESAYFSLRSKVRPYETDAATHPYNNLLRCRENWHVAQKGGEHAEKKDSLGTFFDGLCKYARYSKFEVRGVLRNADFNNPANVICSLSFDRDGDYFASAGISKKIKVFDFNALCNDSIDIHYPVFEMSNGSKLSCVCWNNYIKNYLASTDYDGVVKLWDASTGQVFSQLTEHEKRAWSVDFSPVCPTKLASGSDDCSVKLWNINERNSLGTIGNVANVCCVQFSAHSSHLLAFGSADYSTYCFDIRNLRSPWCVLAGHRKAVSYVKFLDSGTLVSASTDNTLKIWDLSKTSPVVPSASACTLTLSGHTNEKNFVGLSVADGYIACGSETNEVYSYYKSLPMPITSHKFGSIDPISGKDTDDDNGQFVSSVCWKGNSDMLIAANSSGCIKVLQMI* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2390 1047 SUPERFAMILY Protein kinase-like (PK-like) 459 553 IPR011009 -
Amo05g2390 1047 Pfam WD domain, G-beta repeat 818 855 IPR001680 GO:0005515
Amo05g2390 1047 Pfam WD domain, G-beta repeat 907 939 IPR001680 GO:0005515
Amo05g2390 1047 SMART WD40_4 858 897 IPR001680 GO:0005515
Amo05g2390 1047 SMART WD40_4 815 855 IPR001680 GO:0005515
Amo05g2390 1047 SMART WD40_4 1006 1045 IPR001680 GO:0005515
Amo05g2390 1047 SMART WD40_4 901 939 IPR001680 GO:0005515
Amo05g2390 1047 SMART WD40_4 950 989 IPR001680 GO:0005515
Amo05g2390 1047 SMART WD40_4 773 812 IPR001680 GO:0005515
Amo05g2390 1047 SMART WD40_4 718 762 IPR001680 GO:0005515
Amo05g2390 1047 PRINTS G protein beta WD-40 repeat signature 799 813 IPR020472 -
Amo05g2390 1047 PRINTS G protein beta WD-40 repeat signature 842 856 IPR020472 -
Amo05g2390 1047 PRINTS G protein beta WD-40 repeat signature 926 940 IPR020472 -
Amo05g2390 1047 ProSiteProfiles Trp-Asp (WD) repeats profile. 822 864 IPR001680 GO:0005515
Amo05g2390 1047 PANTHER PROTEIN SPA1-RELATED 2 52 1047 IPR044630 GO:0009640
Amo05g2390 1047 SUPERFAMILY WD40 repeat-like 730 1045 IPR036322 GO:0005515
Amo05g2390 1047 MobiDBLite consensus disorder prediction 1 23 - -
Amo05g2390 1047 ProSitePatterns Trp-Asp (WD) repeats signature. 926 940 IPR019775 -
Amo05g2390 1047 Gene3D Transferase(Phosphotransferase) domain 1 283 554 - -
Amo05g2390 1047 ProSiteProfiles Trp-Asp (WD) repeats profile. 908 948 IPR001680 GO:0005515
Amo05g2390 1047 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 908 941 - -
Amo05g2390 1047 ProSitePatterns Trp-Asp (WD) repeats signature. 799 813 IPR019775 -
Amo05g2390 1047 Gene3D - 706 1047 IPR015943 GO:0005515
Amo05g2390 1047 Coils Coil 577 604 - -
Amo05g2390 1047 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 822 857 - -
Amo05g2390 1047 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 821 IPR001680 GO:0005515
Amo05g2390 1047 PANTHER PROTEIN SPA1-RELATED 2 52 1047 - -
Amo05g2390 1047 ProSitePatterns Trp-Asp (WD) repeats signature. 842 856 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2390 Amo-Chr5 51289238 51296020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2390 842 985 Miscellaneous Gene Families AT5G08390 30.822 4.29e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2390 K16240 - gmx:100778303 1478.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2390 05 51289238 51296020 Amo13g3320 13 106609434 106615496 PCT
Amo05g2390 05 51289238 51296020 Amo03g2324 03 97360975 97366973 PCT