Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2324 ATGCAAAAACAGAAGCTGAAACCTGACACATACAAAAACCATTCCCTTTCTTCATTCCTTCCGCGACTAGGTTCACATTTCACAGCGGTTGAATTGTTCTCGGCTGTAATTGTTTATTTTGATCCTATGGATCAAGAATTGATTAACGAGTCTATGAGATTGGGGGTTGTTGATGAGGGTTTACAACTCCAAACTAAAGATGAGGAGCTTTCAGTAAACCCCGAGAGCAACAAAATAATAAAACCCCAAGTTGACCACAATGACTCCTCCCATATCCCACCCCCAGAATGTACTGACGTTAGACAAGGTACTATGTCACGACTTCAGCATCAAATTCGCCTTTCCGGTGACGCTGATGATATGGTTGAAGAATTGACAGTGAGAAGTTGCAATGGTTCGAGCTTAGATATTGGTACACAGGGCAATCAAGGGCCTGCGTATAATACTCAGAGCCAAATGCAGCTAGCAAGTGATTCAGGAATTGGAACTTTACTTCTTGGTGATACTGGGTGTAGAAACAGTGACCAAGCTTCCTCAAAAGTTATATCTAGATCAGGATTTGCTGAGTATTTTATTAAAAATACGATAAAGGGAAAGGATATTGTGTGTAAAGATTCATCTTCTATTGGCTTGACTGTTGAGTCTAGAGATCAGAATCTGATGAAGGCTGGCATTGGTACTCAGATGGATTCCAGTGTCCCGCTAAGCCCTGTCTCAACGACTGCAAAGTCTCCTTATAATGCTTCATTGCCAAAATCTCATGGGTCTCAATTTAATGGGGTCAGTTTAAGAGAATGGTTGAACGCTGGGCGACTCAAACGAAGCAAAGCAGAGTGTTTGAGTATATTTAGAAAGATTGTAGATTTGGTGGATGGCTCACACTCTCAGGGGTTTGCATTGCGCAACCTGAACCCGTCTTATATTAAAGTGTTACCATCAAACCAGGTTATCTACCTTGGGTTACAGAAACATATGTTAGATAATGGTGCAAATTCAGAAGTTCTTCAATTACGAAGTTCCTCTATTCGAAAAAGGATGTCAGAGCAGGTAACATCTCCCTCTCATGACGCATGGTTAAAGAAACAAAAATTTAATGAGTATGTGAGAGGTGTTGGTGATCGGAGTCAGTGCGCTTCAAGGCCTGACTTGTATCTTCAAATTACTGTTGATAGCAAAGTTGGTTCAGCTGGTTCAAAAGATTATCACAACCAATATAAGTGTGTCCAATTTCCGAAACATAATATTTGGAAAGTGCCTAGCGTCCCTGACATATCCAATGGAGGTCTACTGCAGTTGACTTCTTTGAATGAAAGATCAGAAGATAAGTGGTATAAAAGTCCCGATGGAGGCTGTACTACATCAGCAAATATCTACTCTCTGGGTGTTCTCTTTTTTGAGTTGCTCAGTCAATTTGACTCTGAAGGATCCCATATTGCAGCAATGTCTGATCTTCATCTTAGGATTCTACCTCAGGCTTTCCTGTCAGAAAATCCTCTGGAAGCCGGGTTTTGTCTTTGGCTGTTGCATCCTGAGTCATCATCACGTCCAACAACACGGGAGATACTACGATCTGAAGTATTTAATGGAATTCAGGAGGTTTATAGTGAAAAATTATTATTAGATTTTGACAAAGCAGAAGCACAATCGGAATTGTTATTGCATTTCCTCATCTTGTTAAAAGAGGAGAGGCAAAAGAATGCGTTCAAACTGGAAGAAGTCACCAGATTCTTGGAATCAGATATAGAAGAGGTGGTGAGGGGACATAGCTCTGGAAAATACTTGGTTTCTGCTGGCTTGCATAACGATATATCTTGCCATAATGAGAGTTCATCTCTCAACAAAAAACCTTCATGTTCAGAATCAGTATCCCCTGCATGCCCAATCTCTAATGCAAACCAAATGAGAGTCATAAGAAATATGTGCCAGCTTGAAAATGCTTATGTTTCAATGAGATCTAAAATTCAGATTCCTGAAACAGATGCTGCAACTCACCCACATAAAGATAAACCAAGAGATAGGTTTGTGGCACAAAGAGGCAAGGAACAAGATAAAAAAACAGATTCTTTAGGAGCCTTTTTTGATGGTTTTTGCAAGTATCTACGTTATAGCAAGTTTGAGGAGCGGAGTATATTGAGAAATTCAGATATTAACAGTCTTGGAAATGTAATTTGCTCTCTAAGTTTTGATAGGGATGAAGAGTACTTCGCTGCTGCTGGGGTATCAAAGAAAATAAAAATTTATGAGTTCAGCTCACTTTTCAATGACTTAGCTGAAATCCATTATCCTGTAGTTGAGATGTCAAATGAATCAAAGTTCAGTTGTGTATGCTGGAATAGCTACATCAGGAACTATCTTGCCTCCACAGACTACGATGGAGTTGTTAAGCTATGGGATGGTATTACAGGTCAAGGGTTTGCTCACTTCACTGAACATGAAAAGAGGGCTTGGTCTGTTGATTTCTCTCCGGCATACCCTACAAAATTTGCTAGTGGGAGTGATGATTGTTCTGTGAAGCTGTGGAGTATCAATGAGAGAAACTCTGTAGGCACAATCCAGAATGTTGCAAATGTCTGCTGTGTTCAATTCTCTGCTTATTCATCTAATTTACTGGCCTTTGGATCTGCAAATTACTTGACTTATTGCTATGATCTTCGCAATCTTAGAAGCCCCTTGTGTGTGTTGGCTGGCCATCATAAAGCTGTAAGCTATGTCAAATTTTTGGACTCTGTAACACTTGTTTCTTCATCAACCGACAATACATTAAAGATCTGGGATCTCAACAAAACCTCTCCTGTGGGTCCTTCTACTAATGCTTGCAGCTTAACCTTGTCAGGGCATACCAATCAGAAGAATTTCGTGGGTTTATCGGTTGCTGATGGATATATTGCATGTGGCTCTGAAACAAATGAGGTTTATGCCTACTATAAATCTCTTCCCCAGCAAATCACATCACACAAGTTTGGGTCCGTGGATCCCATTAATGGTAAAAAGACTTATGATGACTATGGCCATTTTGTTTCAAGTGTGTGCTGGAAAGGGAAATCAGACATGGTTATTGCGGCCAATTCAAGTGGGTGTATAAAAGTGTTACAGATTGTGTGA 3102 0.4014 MQKQKLKPDTYKNHSLSSFLPRLGSHFTAVELFSAVIVYFDPMDQELINESMRLGVVDEGLQLQTKDEELSVNPESNKIIKPQVDHNDSSHIPPPECTDVRQGTMSRLQHQIRLSGDADDMVEELTVRSCNGSSLDIGTQGNQGPAYNTQSQMQLASDSGIGTLLLGDTGCRNSDQASSKVISRSGFAEYFIKNTIKGKDIVCKDSSSIGLTVESRDQNLMKAGIGTQMDSSVPLSPVSTTAKSPYNASLPKSHGSQFNGVSLREWLNAGRLKRSKAECLSIFRKIVDLVDGSHSQGFALRNLNPSYIKVLPSNQVIYLGLQKHMLDNGANSEVLQLRSSSIRKRMSEQVTSPSHDAWLKKQKFNEYVRGVGDRSQCASRPDLYLQITVDSKVGSAGSKDYHNQYKCVQFPKHNIWKVPSVPDISNGGLLQLTSLNERSEDKWYKSPDGGCTTSANIYSLGVLFFELLSQFDSEGSHIAAMSDLHLRILPQAFLSENPLEAGFCLWLLHPESSSRPTTREILRSEVFNGIQEVYSEKLLLDFDKAEAQSELLLHFLILLKEERQKNAFKLEEVTRFLESDIEEVVRGHSSGKYLVSAGLHNDISCHNESSSLNKKPSCSESVSPACPISNANQMRVIRNMCQLENAYVSMRSKIQIPETDAATHPHKDKPRDRFVAQRGKEQDKKTDSLGAFFDGFCKYLRYSKFEERSILRNSDINSLGNVICSLSFDRDEEYFAAAGVSKKIKIYEFSSLFNDLAEIHYPVVEMSNESKFSCVCWNSYIRNYLASTDYDGVVKLWDGITGQGFAHFTEHEKRAWSVDFSPAYPTKFASGSDDCSVKLWSINERNSVGTIQNVANVCCVQFSAYSSNLLAFGSANYLTYCYDLRNLRSPLCVLAGHHKAVSYVKFLDSVTLVSSSTDNTLKIWDLNKTSPVGPSTNACSLTLSGHTNQKNFVGLSVADGYIACGSETNEVYAYYKSLPQQITSHKFGSVDPINGKKTYDDYGHFVSSVCWKGKSDMVIAANSSGCIKVLQIV* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2324 1033 PRINTS G protein beta WD-40 repeat signature 828 842 IPR020472 -
Amo03g2324 1033 PRINTS G protein beta WD-40 repeat signature 785 799 IPR020472 -
Amo03g2324 1033 PRINTS G protein beta WD-40 repeat signature 912 926 IPR020472 -
Amo03g2324 1033 ProSitePatterns Trp-Asp (WD) repeats signature. 912 926 IPR019775 -
Amo03g2324 1033 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 808 843 - -
Amo03g2324 1033 Gene3D Transferase(Phosphotransferase) domain 1 260 538 - -
Amo03g2324 1033 PANTHER PROTEIN SPA1-RELATED 2 167 1033 - -
Amo03g2324 1033 ProSiteProfiles Trp-Asp (WD) repeats profile. 894 934 IPR001680 GO:0005515
Amo03g2324 1033 Gene3D - 692 1033 IPR015943 GO:0005515
Amo03g2324 1033 ProSiteProfiles Trp-Asp (WD) repeats profile. 808 850 IPR001680 GO:0005515
Amo03g2324 1033 SMART WD40_4 844 883 IPR001680 GO:0005515
Amo03g2324 1033 SMART WD40_4 992 1031 IPR001680 GO:0005515
Amo03g2324 1033 SMART WD40_4 712 748 IPR001680 GO:0005515
Amo03g2324 1033 SMART WD40_4 759 798 IPR001680 GO:0005515
Amo03g2324 1033 SMART WD40_4 887 925 IPR001680 GO:0005515
Amo03g2324 1033 SMART WD40_4 936 975 IPR001680 GO:0005515
Amo03g2324 1033 SMART WD40_4 801 841 IPR001680 GO:0005515
Amo03g2324 1033 PANTHER PROTEIN SPA1-RELATED 2 167 1033 IPR044630 GO:0009640
Amo03g2324 1033 MobiDBLite consensus disorder prediction 232 251 - -
Amo03g2324 1033 SUPERFAMILY WD40 repeat-like 721 1031 IPR036322 GO:0005515
Amo03g2324 1033 Pfam WD domain, G-beta repeat 803 841 IPR001680 GO:0005515
Amo03g2324 1033 Pfam WD domain, G-beta repeat 889 925 IPR001680 GO:0005515
Amo03g2324 1033 MobiDBLite consensus disorder prediction 660 682 - -
Amo03g2324 1033 MobiDBLite consensus disorder prediction 657 682 - -
Amo03g2324 1033 SUPERFAMILY Protein kinase-like (PK-like) 260 538 IPR011009 -
Amo03g2324 1033 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 894 927 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2324 Amo-Chr3 97360975 97366973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2324 828 974 Miscellaneous Gene Families AT5G08390 28.188 9.72e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2324 K16240 - gmx:100776980 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3320 13 106609434 106615496 Amo03g2324 03 97360975 97366973 hybridization
Amo05g2390 05 51289238 51296020 Amo03g2324 03 97360975 97366973 PCT