Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g1905 ATGAACAAACAACTCAATTTCCGCTGGCTCTTTATCCTAATCCTCTTCTTATCAACATCACCATTTCTTCTCAGTGTTTCCTCCGACGCGAACGGCGGAGGCGGCGCCACCAACCCATTCACCCCGAAGGCCTCTCTGCTTCGCTATTGGGACAAGGAGATCCGCAACAACGTCCCGAAGCCAAACTTCCTCCTCTCAAAGGCGTCCCCGTTAACCGCCGTAGACGCAGCCGCATTCTCAAAACTCGCCGGCTCCGGAGGCGGAATCGCACTCTCCACGCGCCTCCCGGAGTTCTGTGCCGCCGCGAACCTCCTCTGCTTCCCGGACCTTGGAGCCTCGCTGGAGAAGCACGACAAGGACGCCAACTTCGCCGGCTACGGAGACAAGAACTTCACCAACTACGGAACGAGTCGACCCGGTGGTTCCGACGCGTTCAAGAAGTACTCCGACGACGCCAACATCCCCGTCAACGACTTCCGCCGCTACGGCCGCGACTCTGCCGGCCATTCCGAGAGTTTCAGCAGCTACGCCACCGACGGCAATGTTGTCGACCAATCCTTCCACACCTACGGCTCCAGCGCCGCAGGAGGAGGCGGCGATTTCCGCGGCTATGCCTCCGGTGTCAACGTCCCTAACCTGGGGTTCACATCCTACTCTGATCACGCCACCGGAAGAACCCAATCCTTCAATTCATACTCAGAAAACGGCAATGCTGGACAACAATCCTTCACCTCTTATGGCAAAAACGGGAACAAACCCGAGAACACGTTCACAGGGTACGGAACTGAGTCCAACGTTGTCGGGTCCAGGTTCTCTAACTATGCTGAAACCGCCAACGCCGGCAACGACACGTTCAAAGGGTACGGCGTGAATATGAACAACCCAACCAACACTTTCTCAAACTACGCCAGCGGCGGAAACGGCGCCGTGGAGAGCTTCACCACCTACAGAGAGCAATCCAATGTGGGTGCAGATTCTTTCACCTCTTACGCCAAAGGCACCAACGCCGCCAAAGTGGAGTTCAGCAACTACGGAAAATCGTTCAACGAAGGAACTGACACGTTCTCAGGCTACGGAAAAGGTTCCACCGGAAAAACCGAGGTTGGGTTCACTGGCTATGGAGTCAACAACACCTTCAAGGATTACACAAAAGACGGAATGTCATTCGCGAGGTACACAAATGTGAGTTCTGGTTCTGGTTTGGGTTCTTCTCTAGTGAAAACGAAGGATTCTGGTATCAGTGGCAGTTTGGTAAATAAGTGGGTAGAACCGGGCAAATTCTTCAGAGAGAAGATGATAAAAGAAGGTACCGTGATGCCCATCCCTGACATTAGGGATAAAATGCCTAAAAGGTCGTTTTTGCCCCGGACCATATTGTCGAAACTACCCTTCTCTACTTCTAAGATCCCTGAACTGAAGCAGATTTTCAAAGCCTCAGACAACGGTTCCATGGAGAAGATGATGAGAGAGTCATTGCAAGAGTGCGAGAGGGTCCCATCGCCCGGGGAAACGAAACGGTGCGTTGGATCGATGGAGGACATGATCGACTTTGCAACTTCGGTTTTGGGTCGGAACGTTGCGGTTCGGTCAACCCTGAACGTAAACGGGTCGAAGAAGAATGTGTTGGTGGGTAAGGTTATTGGGATCAATGGTGGAAGGGTCACGCAGTCTGTGTCGTGTCATCAAAGTTTGTTTCCTTATTTGTTGTATTATTGTCATTCGGTTCCGAAGGTCCGGGTTTACGAAGCGGATCTACTTGACCCGAAAAGTAAGGATAAGGTTAACCACGGTGTTGCTATTTGTCACTTGGATACCTCGGCTTGGAGCCCCACTCATGGTGCATTCCTTTCTCTTGGGTCGGGTCCGGGTCGGATTGAAGTTTGTCATTGGATCTTTGAGAATGACATGACTTGGACCATTGCTGATTGA 1929 0.5226 MNKQLNFRWLFILILFLSTSPFLLSVSSDANGGGGATNPFTPKASLLRYWDKEIRNNVPKPNFLLSKASPLTAVDAAAFSKLAGSGGGIALSTRLPEFCAAANLLCFPDLGASLEKHDKDANFAGYGDKNFTNYGTSRPGGSDAFKKYSDDANIPVNDFRRYGRDSAGHSESFSSYATDGNVVDQSFHTYGSSAAGGGGDFRGYASGVNVPNLGFTSYSDHATGRTQSFNSYSENGNAGQQSFTSYGKNGNKPENTFTGYGTESNVVGSRFSNYAETANAGNDTFKGYGVNMNNPTNTFSNYASGGNGAVESFTTYREQSNVGADSFTSYAKGTNAAKVEFSNYGKSFNEGTDTFSGYGKGSTGKTEVGFTGYGVNNTFKDYTKDGMSFARYTNVSSGSGLGSSLVKTKDSGISGSLVNKWVEPGKFFREKMIKEGTVMPIPDIRDKMPKRSFLPRTILSKLPFSTSKIPELKQIFKASDNGSMEKMMRESLQECERVPSPGETKRCVGSMEDMIDFATSVLGRNVAVRSTLNVNGSKKNVLVGKVIGINGGRVTQSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPKSKDKVNHGVAICHLDTSAWSPTHGAFLSLGSGPGRIEVCHWIFENDMTWTIAD* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g1905 642 ProSiteProfiles BURP domain profile. 427 641 IPR004873 -
Amo05g1905 642 SMART BURP_2 425 641 IPR004873 -
Amo05g1905 642 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 15 642 - -
Amo05g1905 642 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 15 642 - -
Amo05g1905 642 MobiDBLite consensus disorder prediction 226 261 - -
Amo05g1905 642 Pfam BURP domain 427 639 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g1905 Amo-Chr5 40328363 40330608 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g1905 - - gmx:100776642 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1905 05 40328363 40330608 Amo15g0134 15 5141548 5144557 hybridization
Amo05g1905 05 40328363 40330608 Amo05g1905 05 40328363 40330608 PCT
Amo15g0134 15 5141548 5144557 Amo05g1905 05 40328363 40330608 PCT
Amo05g1905 05 40328363 40330608 Amo15g0134 15 5141548 5144557 PCT