Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0439 ATGGCTGTTCAAGCTCAATACCCATCCAATCTTCTCCTTCTCAACACCAACAACAGTAATAATAACGATGACTATTCTTCTGCCTTACAACCACCTCATCAACTCTCCCGTAAGAGACCAAGACAACCAACCCCAATTCCAATTCCAATTCCAAATAATCTCATGAATCAATTCAATCCTCCTCCTCCTCCTCCGCAACAACAACAGCATCAAAATCAAAATGTAGTCTCCACTGGCCTACGCTTATCCTTCTCTTCTCAACAAAGACTACAATGGCAGCAGACTTCTTCTCTATTATCGCAACAATTAGCAGACCAAATCAAACAACAGAGACACGAAATTGATCAATTCCTACAAGCACAGGGAGAGCAATTGCGCCGTTCATTGGCGGATAAGAGACACAACCATTTCCGCGCACTCATAACCGCCGCCGAGGACACATTAGCGCGACGCTTGAGGGATAAAGAAACAGAGGTTCAAAAAGCCACGCGCCGCAACGCTGAGTTAGAGGCACGCGCCGCGCATCTTACAGCCGAGGCTCAGCTTTGGCAGGCCAAGGCAAAAGCGCAGGAAGCCACCGCCGCTTCCTTGCAGGCGCAGCTCCACCACGCCATCATGAATGCCGCCTACGGAGGCGGAGCCGGTCCTGCAGGTACGGCGGATGACGCCGCCGCGGGGGTAATGTCGTGCGCGGAGGACGCCGAGTCGGCCTACGTTGACCCGGAGCGAGTGGCGGCGGCGGCAGGTCCAAGGTGCCGCGGGTGCGAGAGGCGCGTAGCGACGGTGGTGATGCTGCCGTGTCGACACCTTTGCGTTTGCGGCGAATGCGAGATGCATTTCCGTGCTTGCCCCGTTTGCCTCACCGTTAAAAATTCAACCGTTGAGGTTTTTCTTTCTTAA 900 0.5333 MAVQAQYPSNLLLLNTNNSNNNDDYSSALQPPHQLSRKRPRQPTPIPIPIPNNLMNQFNPPPPPPQQQQHQNQNVVSTGLRLSFSSQQRLQWQQTSSLLSQQLADQIKQQRHEIDQFLQAQGEQLRRSLADKRHNHFRALITAAEDTLARRLRDKETEVQKATRRNAELEARAAHLTAEAQLWQAKAKAQEATAASLQAQLHHAIMNAAYGGGAGPAGTADDAAAGVMSCAEDAESAYVDPERVAAAAGPRCRGCERRVATVVMLPCRHLCVCGECEMHFRACPVCLTVKNSTVEVFLS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0439 299 MobiDBLite consensus disorder prediction 42 68 - -
Amo05g0439 299 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 62 298 IPR017066 -
Amo05g0439 299 Coils Coil 145 200 - -
Amo05g0439 299 MobiDBLite consensus disorder prediction 13 75 - -
Amo05g0439 299 Coils Coil 100 120 - -
Amo05g0439 299 MobiDBLite consensus disorder prediction 13 33 - -
Amo05g0439 299 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN-RELATED 62 298 - -
Amo05g0439 299 ProSiteProfiles Zinc finger RING-type profile. 252 286 IPR001841 -
Amo05g0439 299 Pfam Zinc finger, C3HC4 type (RING finger) 251 288 - -
Amo05g0439 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 299 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0439 Amo-Chr5 5071594 5072993 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0439 K19042 - gmx:100779548 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0439 05 5071594 5072993 Amo01g1564 01 33040824 33058047 PCT
Amo01g1564 01 33040824 33058047 Amo05g0439 05 5071594 5072993 PCT