Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1564 ATGGCAGTTCAAGCTCAGTATCCCTCAAATATTCTCTTTCTAAACAGAAACAACGGGCAAGAAGGACAGCAGGCAGCAGGACTAGTCCTTGATCAACCAATCTTATACAACAACAATCATGGAAGTGCTAATTCTCGAAAGAGAACAAGAGAGGCCACAGTTCACAGCAACAGCAATGTTGTCATGAACAATAATAATAATAATAATCCATTGATACCTTTCGAATCCCAACCTCCACAACTCATACACCTTTCTCAGCTGCACAATAATGTGGTCTCAACAGGCCTACGCTTATCCAACTCTACCATCGACCAACAACAACTTCTTCATGGATCTCAATCTTCATCTTCTTCTTCTTCTCTCTTATCTCTGTTCTCACAAGGATTTGCTTCCCAAATCAAACAACAAAGGGACGAAATTGAACAATTCCTCCAAGCTCAGGGGGAGGAGTTGCGGCGGGCATTGGCAGAGAAAAGGCAGAGGCATTACCGCGCGCTGCTGACCGCCGCGGAGGAGGTGGTGGCACGGCGGCTCAGGGAGAAGGAGGCGGAGGTTGAGAAGGCCACACGGCGGAACGCCGAGCTGGAGGCGCGTGCCGCGCAGCTCGCAGCGGAGGCGCAGGTGTGGATGGCGAAGGCGAGGACCCAGGAAGCGGCGGCGGCATCGTTACAGGCGCAGCTCCAGCAGACCATGATGGCCTCTGCTGGCGCCGCCACACACGGCGGAGATGACGGTGGCGCCGGATTGTCATGCGCGGTTGAGGGACAGGCGGAGGACGCAGAATCAGCGTATGTGGACCCGGACAGGGTGGTGATGGTTTCGGCAGCGGCGGCGCGTCCAAAGTGCCGGGGATGCGGGCGGCGCGTGGCTTCAGTTGTGGTTCTGCCGTGTCGGCACTTATGCATCTGTACGGAATGCGAGGCGCACTTCCGCGCGTGCCCCGTTTGCCTTACACTCAAGAATTCAACCGTTGAGGTCTTTCTCTGA 987 0.5481 MAVQAQYPSNILFLNRNNGQEGQQAAGLVLDQPILYNNNHGSANSRKRTREATVHSNSNVVMNNNNNNNPLIPFESQPPQLIHLSQLHNNVVSTGLRLSNSTIDQQQLLHGSQSSSSSSSLLSLFSQGFASQIKQQRDEIEQFLQAQGEELRRALAEKRQRHYRALLTAAEEVVARRLREKEAEVEKATRRNAELEARAAQLAAEAQVWMAKARTQEAAAASLQAQLQQTMMASAGAATHGGDDGGAGLSCAVEGQAEDAESAYVDPDRVVMVSAAAARPKCRGCGRRVASVVVLPCRHLCICTECEAHFRACPVCLTLKNSTVEVFL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1564 328 ProSiteProfiles Zinc finger RING-type profile. 282 316 IPR001841 -
Amo01g1564 328 Pfam Zinc finger, C3HC4 type (RING finger) 281 317 - -
Amo01g1564 328 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE ISOFORM X1 35 328 - -
Amo01g1564 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 328 IPR013083 -
Amo01g1564 328 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE ISOFORM X1 1 24 - -
Amo01g1564 328 PIRSF SBP1_RNase_bind 1 328 IPR017066 -
Amo01g1564 328 Coils Coil 171 212 - -
Amo01g1564 328 Coils Coil 141 161 - -
Amo01g1564 328 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 35 328 IPR017066 -
Amo01g1564 328 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 24 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1564 Amo-Chr1 33040824 33058047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1564 282 318 Miscellaneous Gene Families AT2G21380 37.838 5.95e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1564 K19042 - gmx:100788924 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g0439 05 5071594 5072993 Amo01g1564 01 33040824 33058047 PCT
Amo01g1564 01 33040824 33058047 Amo05g0439 05 5071594 5072993 PCT