Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g0417 ATGTCTACTCCCGCCGCTGCTTCTGCCTCCCCTCTCATCTCCGTCAGTCCCGATGAACTCAGGTTCCCTTTTGAGCTGGAGAAGCAATCATTTTGTGATCTTAAAGTTGTGAATAACACAGAGAACTATGTTGCTTTCAAGGTCAAGACTACTTCGCCAAAGAAGTACTTTGTACGGCCTAACACTGGTGTTATACAGCCCTGGGACTCGTGTATCATCAGAGTCACTCTTCAAGCCCAACGTGAATACCCTCCAGACATGCAATGCAAGGACAAGTTTCTACTACAGAGCACAGTAGTGAATCCAAATACTGATGTTGATGATCTTCCTGCAGATACTTTTAATAAGGAAAGTGGAAATACAATAGAAGAGTTGAAACTAAGAGTTGCGTATATTGCTTCTAACTTAACCCAAGGAAGCTCTGAAGATGATGCATTGAAGAACTCCGCACAAAAACTTGATAGTTCTTATAATCAGGCTTTACAGCAGCTGAAGGAAGAAAGAGATGCCGCCCTGAGACAAACACGACAGCTGCAACAGGAACTGGACATGCTGAAAAGGCGAAAAAGCCAAAGAGGAGATCCTGGCTTTTCCCTTATCTTTGCCTTTTTTGTAGGTCTCATTGGACTTGTGCTTGGCTTTCTTTTAAAACTTCTATTCTCTTCACCACCACCATCACTATCACCATCTACGGAATGA 699 0.432 MSTPAAASASPLISVSPDELRFPFELEKQSFCDLKVVNNTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTVVNPNTDVDDLPADTFNKESGNTIEELKLRVAYIASNLTQGSSEDDALKNSAQKLDSSYNQALQQLKEERDAALRQTRQLQQELDMLKRRKSQRGDPGFSLIFAFFVGLIGLVLGFLLKLLFSSPPPSLSPSTE* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g0417 232 SUPERFAMILY PapD-like 7 139 IPR008962 -
Amo05g0417 232 ProSiteProfiles Major sperm protein (MSP) domain profile. 12 132 IPR000535 -
Amo05g0417 232 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 9 223 IPR016763 GO:0005789
Amo05g0417 232 Gene3D Immunoglobulins 6 135 IPR013783 -
Amo05g0417 232 PIRSF VAMP_assoc_prot 5 159 IPR016763 GO:0005789
Amo05g0417 232 PIRSF VAMP_assoc_prot 133 218 IPR016763 GO:0005789
Amo05g0417 232 Coils Coil 147 188 - -
Amo05g0417 232 Pfam MSP (Major sperm protein) domain 13 116 IPR000535 -
Amo05g0417 232 PANTHER VESICLE-ASSOCIATED PROTEIN 2-1 9 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g0417 Amo-Chr5 4813208 4817129 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g0417 - - aprc:113869624 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g1320 11 45872392 45880631 Amo05g0417 05 4813208 4817129 PCT