Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2351 ATGGGTCACCAACGACTTTTGTCCAAGATTGCAACCAATGACAAGCATGGAGAGAACTCGCCATATTTTGATGGGTGGAAAGCTTATGATAGAAACCCATTTCACCCAACAAAAAATCCTCAAGGTGTTATCCAGATGGGTCTTGCTGAAAATCAGCTTTGCTTCGATCTTATTGAAGAGTGGATAAGGAACAATTCCAAAGCTTCCATATGTACTCCTGAAGGAGTGCATCTGTTTAGAGATATTGCTAACTTTCAAGACTATCATGGATTGCCACAGTTCAGAAAAGGTGTGGCGAATTTCATGTCAAAAGCAAGGGGTGGTAGGGTCAAATATGATCCTGAGCGTATATTGATGAGTGGAGGAGCAACAGGTGCAAATGAATTAATAATGTTTTGTTTGGCTGATCCTGCTGATGCATTCATGGTTCCCACTCCTTATTATCCAGCATTCGTGCGTGATCTTGGTTGGAGAACTGGGGTGCAACTTATTCCTGTTCATTGTGATAGTTCTAACAATTTCAAAATAACAAGAGAAGCCCTTGAAGAAGCTTATCGTGAAGCAAAACAAAACAACATCAATGTGAAAGGTTTGATCATAACAAACCCTTCAAACCCTTTGGGAACCACATTGGACAAAGAAACCCTTAAAAGCCTTGTGAGGTTCATCAATGAGAAGAACATTCACTTAGTTTGTGATGAAATTTATGCCGCCACTGTTTTCACCACTCCAAGATTTGTGAGTATCTCTGAAGTCATGCTAGAAATGGAGTGCAAGAAAGAACTCATTCACATAATCTATAGTTTATCAAAGGATATGGGGTTACCGGGTTTTAGGGTTGGCATTGTTTATTCCTACAATGATGATGTTGTGAGTTGCGGCCGAAAAATGTCGAGTTTCGGATTAGTCTCTTCTCAGACTCAACATTTTCTAGCATCGTTACTTTCTGACGAGGATTTTATCGACAGATATTTAGAAATTAGCAAAAGGAGGCTCGCGAAGCGTCATAGTTTCTTCACGAAAGGGCTCGAAACGGTTAACATTACTTGCTTGCCAAGCAATTCAGGACTATTTTGTTGGATGAACTTGAGGAGGCTATTGAAGGAGAAAACTTTTGAAGGTGAAATGAAGCTTTGGCGTGTGATCATCAATGAGGTGAAGCTCAATGTTTCACCGGGGTCAAGTTTCAATTGTTCCGAGCCTGGTTGGTTTAGGGTTTGCTTTGCTAACATGGATGATGAGACTGTGGAGGTTGCATTGAAAAGGATTAGGGCTTTTGTTGGGAGAGAAACTAATAATGGGAAAAGGGTTGAACTCAAACGTTGGAAAAGCATTAATACTAATAAGTTAAGGCTAAGCTTCAACTCTAGAAGGTTTGATGAGAATGTTATGTCACCTCATCACATGATGTCTCCTCATTCACCAATGCCTCACTCACCCCTTGTTCGTGCCACTTAA 1458 0.4053 MGHQRLLSKIATNDKHGENSPYFDGWKAYDRNPFHPTKNPQGVIQMGLAENQLCFDLIEEWIRNNSKASICTPEGVHLFRDIANFQDYHGLPQFRKGVANFMSKARGGRVKYDPERILMSGGATGANELIMFCLADPADAFMVPTPYYPAFVRDLGWRTGVQLIPVHCDSSNNFKITREALEEAYREAKQNNINVKGLIITNPSNPLGTTLDKETLKSLVRFINEKNIHLVCDEIYAATVFTTPRFVSISEVMLEMECKKELIHIIYSLSKDMGLPGFRVGIVYSYNDDVVSCGRKMSSFGLVSSQTQHFLASLLSDEDFIDRYLEISKRRLAKRHSFFTKGLETVNITCLPSNSGLFCWMNLRRLLKEKTFEGEMKLWRVIINEVKLNVSPGSSFNCSEPGWFRVCFANMDDETVEVALKRIRAFVGRETNNGKRVELKRWKSINTNKLRLSFNSRRFDENVMSPHHMMSPHSPMPHSPLVRAT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2351 485 Coils Coil 171 198 - -
Amo04g2351 485 MobiDBLite consensus disorder prediction 465 485 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 116 136 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 294 317 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 79 95 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 262 286 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 192 216 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 138 159 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 228 251 - -
Amo04g2351 485 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 46 72 - -
Amo04g2351 485 CDD AAT_like 84 425 - -
Amo04g2351 485 Gene3D - 66 317 IPR015421 GO:0003824
Amo04g2351 485 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 1 444 - -
Amo04g2351 485 Pfam Aminotransferase class I and II 44 423 IPR004839 GO:0009058|GO:0030170
Amo04g2351 485 Gene3D Aspartate Aminotransferase, domain 1 32 422 IPR015422 GO:0003824
Amo04g2351 485 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1 444 - -
Amo04g2351 485 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 268 281 IPR004838 GO:0003824|GO:0009058|GO:0030170
Amo04g2351 485 SUPERFAMILY PLP-dependent transferases 12 428 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2351 Amo-Chr4 95684175 95688670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2351 K20772 - gmx:100775969 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3511 14 138628029 138632710 Amo04g2351 04 95684175 95688670 hybridization
Amo04g2351 04 95684175 95688670 Amo02g0324 02 3983198 3988033 PCT
Amo02g0324 02 3983198 3988033 Amo04g2351 04 95684175 95688670 PCT