Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2188 AGGTTATCTGTGGGTTCGGTTTGGATGACTGCGTCTGAGAACGCTCTAACTTTATTAAACAAACACGGAAAGTGGAAAGCAGGAAATTGTCTTTACAACTACTGCCATTTCTTCCACTTTCATCAACATTTATTTCACTCACACGCTTCAAACGACGTCGTTTTGCTTAACATTCTCATGGCCCTCTTGAAGACCTCCACCACTCTCTCCTTCAGAGCAACCGCTTTTCCGCTCCATGGCCATACCACCAACACCAGGAAGTTGCATTGGAAGCCTACTCAAGCTGCTTTGACATCCAGTTTCCACCTTCCAATGCGTAGCTTTGAGGCTAAGAACAGGACTTCCACAGATGACGTAAAGCGTCTGAGATTGATAACTGCCATTAAGACACCATACCTACCCGATGGTCGCTTTGATCTTGAAGCATATGATACCTTAGTAAATTTGCAGATTGAAAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGAGAAGGCCAATTAATGAGCTGGGACGAACACATAATGCTTATTGGGCACACAGTCAACTGTTTCGGAGTGAAAATCAAGGTTATAGGAAACACCGGAAGCAACTCAACAAGGGAAGCAATCCATGCCACAGAGCAGGGTTTTGCTGTTGGGATGCACGCTGCCCTTCACATAAACCCTTACTACGGCAAAACCTCCTTGAATGGTTTGATTTCTCACTTCAATACCGTGCTTCCCATGGGGCCTACCATCATATACAATGTGCCTTCAAGGACCAGTCAAGACATTCCTCCACAGGTGATTCAAACCTTAGCACAGAGTGCGAGTTTAGCCGGTGTCAAGGAATGTATGGGAAATGACAGGATCAAACAATATACAGATAATGGTATTGTTGTGTGGAGCGGGAATGATGACCAATGCCATGATGCTAGATGGGGTTACGGGGCGACAGGAGTGATATCTGTCGCAAGCAACCTGGTTCCCGGTTTAATGCGAGAACTCATAATTGGTGGTGAGAATCCGGCGCTGAATTCTAAGCTCATGCCTCTTGTTGAATGGCTTTTTTGCGAGCCAAACCCCATCGGTTTGAACACAGCTCTTGCTCAACTCGGAGTTGCTCGGCCGGTTTTCAGGCTACCATATGTACCTCTCCCTTTGAAGAAGCGGATGGAATTTGTCAATTTGGTGAAGGGAATCGGTCGAGAGCACTTTATTGGAGACAAAGATGTTCAGGTTCTTGATGATAATGACTTTATCTTAATTGGTCGTCATTAA 1266 0.4534 RLSVGSVWMTASENALTLLNKHGKWKAGNCLYNYCHFFHFHQHLFHSHASNDVVLLNILMALLKTSTTLSFRATAFPLHGHTTNTRKLHWKPTQAALTSSFHLPMRSFEAKNRTSTDDVKRLRLITAIKTPYLPDGRFDLEAYDTLVNLQIENGVEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGVKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSLNGLISHFNTVLPMGPTIIYNVPSRTSQDIPPQVIQTLAQSASLAGVKECMGNDRIKQYTDNGIVVWSGNDDQCHDARWGYGATGVISVASNLVPGLMRELIIGGENPALNSKLMPLVEWLFCEPNPIGLNTALAQLGVARPVFRLPYVPLPLKKRMEFVNLVKGIGREHFIGDKDVQVLDDNDFILIGRH* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2188 421 SMART DHDPS_2 121 397 IPR002220 GO:0016829
Amo04g2188 421 Pfam Dihydrodipicolinate synthetase family 123 394 IPR002220 GO:0016829
Amo04g2188 421 ProSitePatterns Dihydrodipicolinate synthase signature 1. 157 174 IPR020624 GO:0016829
Amo04g2188 421 SUPERFAMILY Aldolase 124 395 - -
Amo04g2188 421 CDD DHDPS 123 393 IPR005263 GO:0008840|GO:0009089
Amo04g2188 421 ProSitePatterns Dihydrodipicolinate synthase signature 2. 250 280 IPR020625 GO:0016829
Amo04g2188 421 PANTHER 4-HYDROXY-TETRAHYDRODIPICOLINATE SYNTHASE, CHLOROPLASTIC 78 420 - -
Amo04g2188 421 Gene3D Aldolase class I 115 421 IPR013785 -
Amo04g2188 421 PANTHER DIHYDRODIPICOLINATE SYNTHASE 78 420 IPR002220 GO:0016829
Amo04g2188 421 PRINTS Dihydrodipicolinate synthase signature 154 175 IPR002220 GO:0016829
Amo04g2188 421 PRINTS Dihydrodipicolinate synthase signature 190 208 IPR002220 GO:0016829
Amo04g2188 421 PRINTS Dihydrodipicolinate synthase signature 222 238 IPR002220 GO:0016829
Amo04g2188 421 PRINTS Dihydrodipicolinate synthase signature 245 262 IPR002220 GO:0016829
Amo04g2188 421 TIGRFAM dapA: 4-hydroxy-tetrahydrodipicolinate synthase 124 388 IPR005263 GO:0008840|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2188 Amo-Chr4 92739144 92742141 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2188 K01714 - gmx:100788930 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2188 04 92739144 92742141 Amo12g2825 12 114596893 114597761 PCT
Amo12g2825 12 114596893 114597761 Amo04g2188 04 92739144 92742141 PCT