Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0468 ATGAGTTCTTCCACCGCTGCTTCCTTTCATAAATGTTTCAAGCCTAACCACCACCACCACCACCACCACCACCATCAACATCACGCGTTCACGTTCACTTTTCTTCACTCTTGTTTCTTCTTCTTCTTTCTCTTGTCAGCTCCTCCTCCTGCATGCGCTTCAACGTTTTCTGGTAATGAAACTGGAGATTTAGAAAAACAAGGTGATTTGTTTCCACAGATTCTACGAGATGAGGCAGTGGGGAGACTCTATCAGCTTGGAAAGGTGAGTGATGGTAATGGCTATCTGGAGAGAACATTCTTGAGTCCTGCATCTATGAGAGCAATCAACGCTATCCGCGAGTGGATGGAGGACGCTGGTTTGAGAACTTGGGTGGACCAAATGGGAAACGTACACGGCCGAGTTGAAGGTGCGAATCCAAATGCCGAGGCCTTATTGATTGGATCTCACATGGATACTGTTGTGGATGCTGGCATGTTTGATGGATCACTAGGAATAGTATCAGCAATATCTGCACTAAAGGCTTTGAAAGTCAATGGAAAGCTGGAAAAGCTAAAGCGCCCTGTTGAGGTGATTGCATTTTGTGATGAAGAAGGAGTGAGGTTTCAAACTACTTTCTTGGGTAGTGGCGCTATAGCCGGCATTTTACCTGCTACAACATTGGAGATATCTGATAAGAGGGATGCAATGATAAAAGATGTTCTCAAGGAGAATTCTATAGAAATTACAGAGGAAAGTTTGTTACAGCTCAAGTATGATCCAAAATCTGTTTGGGGCTATGTTGAGATTCACATTGAACAGGGGCCTGTGCTAGAACAGAAGGGTTTTCCACTTGGTGTGGTTAAAGGCATAGCTGGCCAGACCAGATTGAAGGTTACTGTTAGAGGATCACAGGGTCATGCCGGGACTGTACCGATGTCCATGCGCCAAGATCCTATGGCTGCTGCTGCTGAATTAATAGTAGTTATGGAAAACCTCTGCAAGAACCCAGAAGAATTCCTTTCTTATGATGATCATTGCAGTGATTCTACGGTGAAATCACTTTCGAGTTCACTTGTTTGTACAGTTGGAGAGATATCAACATGGCCGAGTGCTAGTAATGTCATTCCAGGCCAGGTTACATATACTGTGGACATTCGAGCAATTGATGACCTTGGACGCGAGGCTGTTATCTATGATTTATCAAAAAGAATGTATCAAATATGCGATAAGCGCTCCGTTTCCTGCAATATTGAACATAAGCATGATGCAGGTGCTGTGATTTGTGATTCTGAGCTAAGTTCGCAGCTCAAATCCGCAGCATATTCTGCACTAAAGAGGATGGAGGGTGACATTCAGGATGAAGTTCCAACATTGATGAGTGGAGCAGGCCATGATGCAATGGCTATGTCTCATTTAACAAAGGTTGGGATGCTGTTTGTGCGGTGTCGCGGAGGAATAAGTCACTCTCCTCAAGAGCATGTTCTAGATAATGATGTTTGGGCTGCTGGTTTGGCAACCCTCTCATTTCTGGAGAATCTATGA 1524 0.4436 MSSSTAASFHKCFKPNHHHHHHHHHQHHAFTFTFLHSCFFFFFLLSAPPPACASTFSGNETGDLEKQGDLFPQILRDEAVGRLYQLGKVSDGNGYLERTFLSPASMRAINAIREWMEDAGLRTWVDQMGNVHGRVEGANPNAEALLIGSHMDTVVDAGMFDGSLGIVSAISALKALKVNGKLEKLKRPVEVIAFCDEEGVRFQTTFLGSGAIAGILPATTLEISDKRDAMIKDVLKENSIEITEESLLQLKYDPKSVWGYVEIHIEQGPVLEQKGFPLGVVKGIAGQTRLKVTVRGSQGHAGTVPMSMRQDPMAAAAELIVVMENLCKNPEEFLSYDDHCSDSTVKSLSSSLVCTVGEISTWPSASNVIPGQVTYTVDIRAIDDLGREAVIYDLSKRMYQICDKRSVSCNIEHKHDAGAVICDSELSSQLKSAAYSALKRMEGDIQDEVPTLMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPQEHVLDNDVWAAGLATLSFLENL* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0468 507 CDD M20_bAS 82 505 - -
Amo04g0468 507 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 145 154 IPR001261 -
Amo04g0468 507 PANTHER ALLANTOATE DEIMINASE-RELATED 67 501 - -
Amo04g0468 507 Pfam Peptidase family M20/M25/M40 146 496 IPR002933 GO:0016787
Amo04g0468 507 SUPERFAMILY Zn-dependent exopeptidases 71 507 - -
Amo04g0468 507 Gene3D Zn peptidases 92 497 - -
Amo04g0468 507 Pfam Peptidase dimerisation domain 286 396 IPR011650 -
Amo04g0468 507 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 84 331 IPR010158 GO:0016813
Amo04g0468 507 PANTHER ALLANTOATE DEIMINASE-RELATED 67 501 IPR010158 GO:0016813
Amo04g0468 507 Gene3D - 286 418 - -
Amo04g0468 507 SUPERFAMILY Bacterial exopeptidase dimerisation domain 286 419 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0468 Amo-Chr4 9248597 9253841 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0468 K02083 - gmx:100819399 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1599 14 29029658 29033806 Amo04g0468 04 9248597 9253841 hybridization