Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0301 ATGGTGATTGCAAAGAGAGTTGGTGTTGATGTTATTTTGTGGTTGGCAGTGGCTTGTTTTGTGGTAGAAGGTGATGAAAGAGTAAGGCCAATTGCTGGGCCTGATATCTATGAGGGTCGCAATGTAGCTAAGGATGTTCTTGCTCCTGGTGAGATTATTAATAATGTCATGAGCTTTGGTGCCAAACCTGATGGGAAGTTTGATTGCACTCAGGCGTTCATGGACGCATGGAGAGCAACATGCAAGTCGAAAGTGCAAGCAAGGGTTCTGGTCCCTCTAGGAAGGTTCGTGGTTTCGGCAATGTACTTCGCCGGGCCGTGCACGACTCCGGGGCCCGTCACGGTCCAAGTTGAAGGCACCGTGGTTGCAACAACGGACATCAGCGAGTATGTTGACGGCGAATGGCTCATGTTCCAAGACCTCTCCGGTATCAAACTCATTGGTGGTGGCACCTTTGATGGACAAGGAAAAGATTCATGGTCCCAAACTGAGAATTGTGAAACCGACTCCGATAGCGCCTGTGTTAGAGCTCCTAGTAGCATTTTCTTCAGCAGGGTGAACAATGGAATCATACAGAACATAAAAACCTTGAACCCCAAAGGCTTTCACATATTTGTCACAAACTGTGCCAACATTAGACTTAGGTTGCTTAAGCTCACAGCACCAGGTACCAGCCCCAATACTGATGGAATCCACATTAGCCACTCCATCAATGTCAAAATATCAAAATCCAACATTGAAACCGGTGATGATTGTGTCTCTATGATTCAAGGGGTCAACAATGTTACCATTAAGAGACTAAAGTGTGGCCCTGGACATGGTATTAGTATTGGTAGTCTTGGAAAATATCAAGATGAGCTAGAGGTGAGAGGAATTAGGGTGGAGAATTGCACATTGGTTGGCACAACCAATGGCCTAAGAATAAAGTCATGGCCAGAGAAGTATTCAGGTTTAGCAACAGATATAAGCTATAGTGATATTACCATGGAAAATGTTAAAAACCCTATCATCATTGATCAAGAATATCAATGTTCTCCAGGCATCTGCAAAAAGAAGCCATCACTTGTAAAGATATCAAATGTTGGTTTTATAAATGTAAAAGGAACAACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGTAAGCAATTCCCATGTGAAAATGTTCAACTTCACAACATAGACCTCAAGCTTCTTGGACCTATCCTTCCTTCTGGCGCAAGATGTGCCAACGTTAAACCTATCTATGGAGGCATTCAAATGCCACCAGCATGTCCATAG 1281 0.4364 MVIAKRVGVDVILWLAVACFVVEGDERVRPIAGPDIYEGRNVAKDVLAPGEIINNVMSFGAKPDGKFDCTQAFMDAWRATCKSKVQARVLVPLGRFVVSAMYFAGPCTTPGPVTVQVEGTVVATTDISEYVDGEWLMFQDLSGIKLIGGGTFDGQGKDSWSQTENCETDSDSACVRAPSSIFFSRVNNGIIQNIKTLNPKGFHIFVTNCANIRLRLLKLTAPGTSPNTDGIHISHSINVKISKSNIETGDDCVSMIQGVNNVTIKRLKCGPGHGISIGSLGKYQDELEVRGIRVENCTLVGTTNGLRIKSWPEKYSGLATDISYSDITMENVKNPIIIDQEYQCSPGICKKKPSLVKISNVGFINVKGTTISPIAVDLRCSKQFPCENVQLHNIDLKLLGPILPSGARCANVKPIYGGIQMPPACP* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0301 426 Gene3D - 48 420 IPR012334 -
Amo04g0301 426 SUPERFAMILY Pectin lyase-like 53 425 IPR011050 -
Amo04g0301 426 PANTHER - 3 425 - -
Amo04g0301 426 Pfam Glycosyl hydrolases family 28 81 413 IPR000743 GO:0004650|GO:0005975
Amo04g0301 426 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
Amo04g0301 426 PANTHER POLYGALACTURONASE 3 425 - -
Amo04g0301 426 SMART pbh1 259 279 IPR006626 -
Amo04g0301 426 SMART pbh1 319 340 IPR006626 -
Amo04g0301 426 SMART pbh1 236 257 IPR006626 -
Amo04g0301 426 SMART pbh1 289 310 IPR006626 -
Amo04g0301 426 SMART pbh1 209 235 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0301 Amo-Chr4 5202646 5206626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0301 46 425 Glycoside Hydrolase AT4G18180 42.963 7.05e-103 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0301 K01213 - gmx:106796220 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1428 14 24212557 24216587 Amo04g0301 04 5202646 5206626 hybridization
Amo01g3444 01 106984094 106988901 Amo04g0301 04 5202646 5206626 PCT
Amo04g0301 04 5202646 5206626 Amo01g3444 01 106984094 106988901 PCT