Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3444 ATGGGCATTGCAAAGCAAAATACTCTTTTTATTACTATTATTTGCTTTGCATTGGCCTCTTATGCGGTTGCTAGGCCAAGAGCACGGCCATATAGTGGTCCAGACGTCTACAGGGGCAGGAATGTAGCACGAGATATCCTTTTTCCCGGCGAGAAGGTTAACAATGTGCTCGATTTCGGAGCCCAGCCCGACGGCGAATTCGACTCTACCCAGGCATTCATGGAAGCATGGCAAGCAACATGCAACTCAACAGTGCAAAGTAGGGTATATGTTCCAGAGGGTAGATTCTTGGTTTCCCCAGTGTTCTTCTCAGGGCCATGCATGACTCCACATCCCGTAACAGTTAAAGTTGATGGAATTATACTGGCCCCTACCGATCTTTCTGTGTTTGACAACGATGAGTGGATTATTTTCCAGAACCTTAACGGCTTAAGACTCATTGGTCAAGGTACCTTTGATGGGCAGGGTACGGATTCATGGCAGATCACCGAGAAATGTGAATCTAAAAGAGACGGTTTTCGATGCGTCAGAAATCCTAGCAGTCTTTTCTTCAGCCGAGTGAACGATGCGATTATACAGGGGATTAGGTCTGTGAATCCAAAAGGGTTTCACATATTTGTGACTAACTGTGGAAACATAAGGTTGCGAAAGCTTAAGCTGACAGCACCTGAATTCAGCCCCAACACTGATGGCATTCATGTTAGCCACTCCAACAATGTCATCATGTCTAGAAACACCATTGCAACTGGTGATGACTGTGTCTCTATAATCCAAGGTTCTGTCAATATTACCATGAACAGACTCACGTGTGGCCCTGGACATGGTGTTAGCATCGGTAGCCTTGGAAAGTATGCAGACGAGTTAGAGGTGAAAGGTATTCGCCTCATAAACGCCACATTGATTGGAACAACCAATGGTCTCAGAATCAAAACTTGGCCAGATAGATTCCCAGGTTCAGCCTCGGATATATTTTTCACAAACATCGACATGGTAAATGTTAAAAACCCCATCATCATTGACCAAGAGTATGAATGCTTTCCAAACTGCCAAAAGAAGCAAAATACTCTTTTTATTACTATTATTTGCTTTGCATTGGCCTCTTATGCGGTTGCTAAGCCAAGAGCACGGCCACATAGTGGCCCAGATATCTACAAGGGAAGGAATGTAGCACGAGATACCCTTTTTCCCGGCGAGAAGGTTAACAATGTGCTCGATTTCGGAGCCCAACCCGACGGTGAATTCGACTCTACCCAGGGTAGATTCTTGGTTTCCTCAATGTTCTTTTCAGGGCCATGCATGACCCCACATCCCGTAACAGTTCAAGTTGATGGAACTATTTTGGCCCCTACCGATATTTCCGAGTTTGAAAACGATGAGTGGCTCCTTTTCCAGAACCTTAACGGCTTAAGACTCATTGGTCAAGGTACCTTTGATGGGCAGGGTAAGGATTCATGGAAATACACCGAGAATTGTGAATCTAAGAGAGACGGTTCTGCATGCGTCAGAAATCCTAGCAGTCTATTCTTCAGCCGGGTCAACGATGCGATTATACAGGGGATTAGGTCTGTGAATCCAAAAGGGTTTCACATATTTGTGACTAACTGTGGAAACATAAGGTTGCGAAGGCTTAAGCTTACAGCACCAGAAACTAGCCCCAACACTGATGGCATCCATGTTAGCCACTCCATCAATGTCATCATGTCTAGAAACACCATTGCAACTGGTGATGACTGTGTCTCTATAATCCAAGGTTCTGTCAATGTTACCATGAACAGACTCAGGTGTGGCCCAGGACATGGTGTTAGCATCGGTAGCCTTGGAAAGTATGCAGACGAGTTAGAAGTGAAAGGTATTCGCCTCATAAACGCCACATTGCTTGGAACAACCAATGGTGTCAGAATCAAAACTTGGCCAGATAGATTCCCAGGTTCAGCCTCGGATATATTTTTCACAAACATCGACATGGTAAATGTTAAAAACCCCATCATCATTGACCAAGAGTATGAATGCTTTCCAAACTGCAAAAAGAAGCCATCACTTGTGAAGCTTAACAATATTCAATTCAATAATATAAGGGGAACCACGATTAGTCCAGTTGCAGTGGACTTAAGGTGCAGCAAATTGTTCCCATGCAAAGGTGTCATACTTGGCAACATTGATCTCAAGCTTGGATTCCTTCCAACCATGTCTAGATGTGTTAACATTAATCCACTGTATTTCGGCGGTTTGCAAGTCCCACCAGCTTGCGTTTAG 2253 0.4439 MGIAKQNTLFITIICFALASYAVARPRARPYSGPDVYRGRNVARDILFPGEKVNNVLDFGAQPDGEFDSTQAFMEAWQATCNSTVQSRVYVPEGRFLVSPVFFSGPCMTPHPVTVKVDGIILAPTDLSVFDNDEWIIFQNLNGLRLIGQGTFDGQGTDSWQITEKCESKRDGFRCVRNPSSLFFSRVNDAIIQGIRSVNPKGFHIFVTNCGNIRLRKLKLTAPEFSPNTDGIHVSHSNNVIMSRNTIATGDDCVSIIQGSVNITMNRLTCGPGHGVSIGSLGKYADELEVKGIRLINATLIGTTNGLRIKTWPDRFPGSASDIFFTNIDMVNVKNPIIIDQEYECFPNCQKKQNTLFITIICFALASYAVAKPRARPHSGPDIYKGRNVARDTLFPGEKVNNVLDFGAQPDGEFDSTQGRFLVSSMFFSGPCMTPHPVTVQVDGTILAPTDISEFENDEWLLFQNLNGLRLIGQGTFDGQGKDSWKYTENCESKRDGSACVRNPSSLFFSRVNDAIIQGIRSVNPKGFHIFVTNCGNIRLRRLKLTAPETSPNTDGIHVSHSINVIMSRNTIATGDDCVSIIQGSVNVTMNRLRCGPGHGVSIGSLGKYADELEVKGIRLINATLLGTTNGVRIKTWPDRFPGSASDIFFTNIDMVNVKNPIIIDQEYECFPNCKKKPSLVKLNNIQFNNIRGTTISPVAVDLRCSKLFPCKGVILGNIDLKLGFLPTMSRCVNINPLYFGGLQVPPACV* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3444 750 SMART pbh1 615 636 IPR006626 -
Amo01g3444 750 SMART pbh1 290 311 IPR006626 -
Amo01g3444 750 SMART pbh1 237 258 IPR006626 -
Amo01g3444 750 SMART pbh1 210 236 IPR006626 -
Amo01g3444 750 SMART pbh1 535 561 IPR006626 -
Amo01g3444 750 SMART pbh1 562 583 IPR006626 -
Amo01g3444 750 SMART pbh1 320 341 IPR006626 -
Amo01g3444 750 SMART pbh1 645 666 IPR006626 -
Amo01g3444 750 PANTHER - 356 414 - -
Amo01g3444 750 SUPERFAMILY Pectin lyase-like 397 747 IPR011050 -
Amo01g3444 750 Pfam Glycosyl hydrolases family 28 81 363 IPR000743 GO:0004650|GO:0005975
Amo01g3444 750 Pfam Glycosyl hydrolases family 28 420 736 IPR000743 GO:0004650|GO:0005975
Amo01g3444 750 PANTHER - 418 746 - -
Amo01g3444 750 PANTHER - 7 354 - -
Amo01g3444 750 PANTHER POLYGALACTURONASE 418 746 - -
Amo01g3444 750 PANTHER POLYGALACTURONASE 356 414 - -
Amo01g3444 750 ProSitePatterns Polygalacturonase active site. 592 605 IPR000743 GO:0004650|GO:0005975
Amo01g3444 750 Gene3D - 49 371 IPR012334 -
Amo01g3444 750 Gene3D - 395 738 IPR012334 -
Amo01g3444 750 ProSitePatterns Polygalacturonase active site. 267 280 IPR000743 GO:0004650|GO:0005975
Amo01g3444 750 PANTHER POLYGALACTURONASE 7 354 - -
Amo01g3444 750 SUPERFAMILY Pectin lyase-like 50 353 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3444 Amo-Chr1 106984094 106988901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3444 418 749 Glycoside Hydrolase AT4G18180 46.418 9.34e-88 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3444 K01213 K01184 gmx:100800324 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3444 01 106984094 106988901 Amo14g1428 14 24212557 24216587 PCT
Amo01g3444 01 106984094 106988901 Amo04g0301 04 5202646 5206626 PCT
Amo14g1428 14 24212557 24216587 Amo01g3444 01 106984094 106988901 PCT
Amo04g0301 04 5202646 5206626 Amo01g3444 01 106984094 106988901 PCT