Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0269 ATGGGTGTTCACACTTTTGAAGAGGAGTCAACCTCACCGGTGCCTCCAGCAAAACTATTCAAAGCCACCGTGGTAGACGGCGATGAACTCACCCCAAAGCTGATTCCGGCAATCCAGAGTATTGAGATCGTTGAAGGAAACGGAGGCCCTGGAACTGTCAAGAAGGTTACCGCTGTTGAAGATGGGAAAACTAGTTATGTGCTACACAAGATTGATGCAATTGATGAGGCTACCTACACATATGACTACACAATATCCGGAGGAACAGGGTTCCAAGAGATCTTAGAGAAAGTTTCATTCAAGACAAAGCTTGAGGCTGCTGATGGTGGATCCAAAATCAAGGTCTCTGTTACATTCCACACCAAGGGTGATGCTCCTCTCCCTGATGAAGTTCATCAAGATGTCAAACAAAAGAGCCAAGGAATCTTCAAGGCTATTGAGGGTTATGTTTTGTCCAACTAG 462 0.4545 MGVHTFEEESTSPVPPAKLFKATVVDGDELTPKLIPAIQSIEIVEGNGGPGTVKKVTAVEDGKTSYVLHKIDAIDEATYTYDYTISGGTGFQEILEKVSFKTKLEAADGGSKIKVSVTFHTKGDAPLPDEVHQDVKQKSQGIFKAIEGYVLSN* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0269 153 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 PRINTS Major pollen allergen Bet V1 signature 142 152 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 Gene3D - 2 153 IPR023393 -
Amo04g0269 153 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 119 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Amo04g0269 153 PANTHER ABA-RESPONSIVE PROTEIN 1 153 - -
Amo04g0269 153 SUPERFAMILY Bet v1-like 2 153 - -
Amo04g0269 153 Pfam Pathogenesis-related protein Bet v 1 family 1 153 IPR000916 GO:0006952
Amo04g0269 153 CDD Bet_v1-like 5 150 - -
Amo04g0269 153 PANTHER - 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0269 Amo-Chr4 4456680 4459221 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0269 - - gmx:100305867 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1378 14 22983142 22985483 Amo04g0269 04 4456680 4459221 hybridization