Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0010 ATGCTTTTTGTAAATGCAAAAAAAGAGACAAAAACATTACATGATGTAGGATCTGTATCTCCCAACCCAAGATCTGCTTCCCTTCTCAATCATCACATGTTCCTCTTTGACTGGTTCTATGGCATTCTAGCCTCCCTCGGCCTTTGGCAAAAAGAAGCCAAGATTCTCTTCCTGGGTCTCGATAATGCCGGCAAGACCACCCTCCTTCACATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCTACCCAACACCCCACTTCCGAGGAATTGAGCATTGGCAAGATCAAGTTCAAGGCTTTTGATTTGGGTGGCCACCAAGTTGCTCGCAGAGTCTGGAAAGACTACTATGCAAAGGTTATAATCGTTATTTTGAAAGCCTTGGCAAATGTTCCGTTTCTAGTGCTAGGAAACAAGATCGACATCCCATACGCAGCTTCGGAAGAGGAGCTACGATATCATCTCGGCCTGACAAATTTCACCACGGGCAAAGGCAAGATCAATCTCACGGATTCCAACCTTCGACCTCTCGAAGTGTTCATGTGCAGCATCGTCCGCAAGATGGGATACGGCGAGGCTTCAAGTGGGGTGATTATGACTGGGCAGAGACTAATAAATTTGGAAGAATCTCAATCCACTTTGGTTCCCGTTTCCTGA 657 0.4597 MLFVNAKKETKTLHDVGSVSPNPRSASLLNHHMFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVIIVILKALANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKINLTDSNLRPLEVFMCSIVRKMGYGEASSGVIMTGQRLINLEESQSTLVPVS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0010 218 SMART sar_sub_1 36 198 IPR006689 GO:0003924|GO:0005525
Amo04g0010 218 CDD Sar1 34 193 - -
Amo04g0010 218 PANTHER GTP-BINDING PROTEIN SAR1A 33 124 - -
Amo04g0010 218 PANTHER RE74312P 126 193 IPR006687 GO:0005525|GO:0006886
Amo04g0010 218 PANTHER GTP-BINDING PROTEIN SAR1A 126 193 - -
Amo04g0010 218 Gene3D - 30 123 IPR027417 -
Amo04g0010 218 Gene3D - 124 199 IPR027417 -
Amo04g0010 218 PANTHER RE74312P 33 124 IPR006687 GO:0005525|GO:0006886
Amo04g0010 218 SMART arf_sub_2 36 178 - -
Amo04g0010 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 193 IPR027417 -
Amo04g0010 218 PRINTS GTP-binding SAR1 protein signature 82 106 IPR006689 GO:0003924|GO:0005525
Amo04g0010 218 PRINTS GTP-binding SAR1 protein signature 109 134 IPR006689 GO:0003924|GO:0005525
Amo04g0010 218 PRINTS GTP-binding SAR1 protein signature 54 77 IPR006689 GO:0003924|GO:0005525
Amo04g0010 218 Pfam ADP-ribosylation factor family 126 194 IPR006689 GO:0003924|GO:0005525
Amo04g0010 218 Pfam ADP-ribosylation factor family 40 124 IPR006689 GO:0003924|GO:0005525
Amo04g0010 218 ProSiteProfiles small GTPase SAR1 family profile. 46 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0010 Amo-Chr4 83066 85592 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0010 K07953 - gmx:100306687 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1357 14 22465822 22467858 Amo04g0010 04 83066 85592 hybridization
Amo01g3314 01 105462924 105465893 Amo04g0010 04 83066 85592 PCT
Amo04g0010 04 83066 85592 Amo01g3314 01 105462924 105465893 PCT