Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3314 ATGTTTCTCTTCGACTGGTTCTACGGCATTCTAGCTTCCCTCGGTCTTTGGCAGAAAGAAGCTAAGATTCTTTTCCTCGGTCTCGATAATGCCGGAAAAACCACCCTCCTTCACATGCTCAAAGATGAGAGATTAGTTCAACATCAACCAACCCAACACCCCACTTCGGAGGAATTGAGCATTGGGAAGATCAAGTTCAAAGCTTTCGATTTGGGCGGTCACCAAGTTGCCCGCAGAGTCTGGAAAGATTATTACGCCAAGGTTGATGCTGTAGTTTACCTAGTTGATGCCTATGACAAGGAGAGGTTTGCTGAATCGAAGAAGGAACTGGATGCATTGCTTTCAGATGAAGCCTTAGCAAATGTTCCATTCCTTGTGCTAGGCAACAAGATTGACATTCCATATGCTGCTTCGGAAGAAGAGCTACGATATCATCTAGGCCTGACCAATTTCACCACGGGGAAGGGAAAGGTCAATCTTACAGAGTCCAATGTTCGGCCTCTTGAAGTGTTCATGTGCAGCATTGTCCGCAAGATGGGGTATGGCGATGGTTTCAAATGGGTCTCTCAATATATAAAGTAG 582 0.4553 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQVARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDEALANVPFLVLGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLTESNVRPLEVFMCSIVRKMGYGDGFKWVSQYIK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3314 193 SMART arf_sub_2 4 193 - -
Amo01g3314 193 CDD Sar1 2 192 - -
Amo01g3314 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Amo01g3314 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Amo01g3314 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Amo01g3314 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Amo01g3314 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Amo01g3314 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Amo01g3314 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Amo01g3314 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Amo01g3314 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 139 IPR005225 GO:0005525
Amo01g3314 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Amo01g3314 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Amo01g3314 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Amo01g3314 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Amo01g3314 193 Gene3D - 1 193 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3314 Amo-Chr1 105462924 105465893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3314 K07953 - pvy:116122777 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3314 01 105462924 105465893 Amo14g1357 14 22465822 22467858 PCT
Amo01g3314 01 105462924 105465893 Amo04g0010 04 83066 85592 PCT
Amo14g1357 14 22465822 22467858 Amo01g3314 01 105462924 105465893 PCT
Amo04g0010 04 83066 85592 Amo01g3314 01 105462924 105465893 PCT