Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2270 ATGGATTTCGAGAGGGAAAATTTTGATCTCTCAGGACCCTTGCATTTGACTTGTGTCCAATGGGATAACGCGCATCATCGAATGTCAGTTGCTGCTAGTTTGGTCCAAGCTGTTTACATTCTAGAAAGGGACCGGCAAGAAAAACGCAAAGATCAAAATGCTCTTGCACCGCCTTGGTGGGCATTCTTCCACTTTCAGTTGCTTCGTCCACTTGTAGATGATGTTGATTCTTCCATCTTTGGTGCAATCTTTGAGTTCAAACCTCCATTGTCTCCACGTAATGACACTTTATACCGAAGTCCACGTTATGTGATTGCCTTTCGTGGTACTCTAACCAAACAGCACTCGGTTTCACGTGACATTGAGCTGGATATCCACTTTATCCAACAAGGTCTTCATCAAACTTCTCGCTCTACCATAGCTCTGAATGCTGTTCGAAATATGGTAGCAACTGTAGGTGATTCGAATGTTTGGTTGGCTGGACATTCCTTAGGATCAGCAATGGCATTGCTTACTGGCAAAACCTTGGCTCAGACCGGCACGTTTGTTGAATCTTTTCTTTTCAACCCACCATTTGTATCTGCTCCAATAGAGAGAATTAAGGATGAGAGAGTGAAACATGGGATTCGATTTGCTGGCAGTGTGATAACAGCTGGACTCACCCTAGCCATGAAAGCCAAGCAGCAGCAGCAGCAGCCGCCGCCGCAGCAGCAGCTGCAACAGGGCAAGCAGCCGCAGCAGCAGAAGGATCTGTGTGTTGCATCATTTGATGCTTTGGCTGCTTGGGTCCCAGGTTTATTTGTGAATCCATCGGACCATATATGCTCAGAGTATATTGGATACTTCGAGCACAGAAGAAAGATGGAGGACATTGGAGCCGGATTCATTGAAAGGTTAGCGACTCAAAACTCGCTTGGTGGATTAGTGATGAGTGCGTTTGGGAAGGAATCTGAAGCCCTGCACCTCATTCCTTCGGCTTCTATGACAGTTAATGTTATGCCTGCACGTGATTTCCGAGAAGCCCATGGGATTCACCAATGGTGGCAACCTGATTTGCGCCTCGAACGCAAGCTGTACAAATACAAGTAG 1089 0.4646 MDFERENFDLSGPLHLTCVQWDNAHHRMSVAASLVQAVYILERDRQEKRKDQNALAPPWWAFFHFQLLRPLVDDVDSSIFGAIFEFKPPLSPRNDTLYRSPRYVIAFRGTLTKQHSVSRDIELDIHFIQQGLHQTSRSTIALNAVRNMVATVGDSNVWLAGHSLGSAMALLTGKTLAQTGTFVESFLFNPPFVSAPIERIKDERVKHGIRFAGSVITAGLTLAMKAKQQQQQPPPQQQLQQGKQPQQQKDLCVASFDALAAWVPGLFVNPSDHICSEYIGYFEHRRKMEDIGAGFIERLATQNSLGGLVMSAFGKESEALHLIPSASMTVNVMPARDFREAHGIHQWWQPDLRLERKLYKYK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2270 362 Pfam Lipase (class 3) 141 181 IPR002921 GO:0006629
Amo03g2270 362 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 4 361 - -
Amo03g2270 362 SUPERFAMILY alpha/beta-Hydrolases 31 198 IPR029058 -
Amo03g2270 362 Gene3D alpha/beta hydrolase 26 206 IPR029058 -
Amo03g2270 362 PANTHER LIPASE CLASS 3-LIKE 4 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2270 Amo-Chr3 93813320 93816003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g2270 1 294 Acyl Lipid Metabolism Gene Families AT2G05260 56.803 3.33e-110 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2270 - - gmx:100811139 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3264 13 103744190 103744600 Amo03g2270 03 93813320 93816003 hybridization
Amo05g2357 05 50204910 50206996 Amo03g2270 03 93813320 93816003 PCT