Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1193 ATGGTTGAAAACTACCTTCCTGCTCCCACATACTTCATCCTTCTCCTAATAACCATAACACGCTTGATATCCACCGTTGGCAACAAAACTGAGCATTTGAACAACAACTCCCTCCTCTCATCGGACCTCATCTCCCGCCACAACCTCCACGACGACCCCGAGTCTCTAGAATCGGCTTCTAGAGACTTCGGCAACCTAGTCCATCATCTCCCGCCGGCAGTGTTCCACCCGCGGTCTCCACAAGACATAGCCTCCCTCGTGAAGACTTCGTACGAGAGCCCTGCCCCTTTCACGATATCCGTGAAGGGACAGGGCCACTCCACGAGGGGTCAGGCTATGGCCAGGGGAGGGGTGGTGGTGGACATGAGGGCCCTCAGAGAAGAAAATAATAGTAATAAGAAGAAGAACATTCGCGTGATTTGGAGAGAGGAAGGATACTATGGTGACGTGGGAGGGGAGGCGCTGTGGGCGGATGTGCTGCGGGAGGCGGCGGAGATGGGAGTTGCACCGGCTTCTTGGACCGATTACTTGTACTTGACTGTGGGAGGGACTCTCTCCAATGGCGGCATCAGTGGCCAGAGCTTCAAGTATGGACCCCAAATCAGCATTGTTCATGAAATGGATGTTATCACTGGAAAAGGAGAACTAGTAACATGCTCTTCACACACAAATTCTGAGTTATTTCATGCGGTGCTTGGAGGCTTAGGACAATTTGGCATTATAACAAGGGCAAGAATTGCTCTTCACCCAGCACCAAAAATGGTGAAATGGGTCAGGCTTCTATACAATGACTTTTCTGCTTTTACCAAAGACCAAGAGCGATTAATCTCAATCAATGGAAGGAAACACAATAATAATGATAATAATGATGACAATGTTGCATTGGATTATGTGGAAGGGATGCTACTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATCCAAGAATCATTTCCCTAGTAACTCAACATAGCATCCTTTATTGTCTTGAATTGGCCAAATATTATGATGAAAAATCTGAAAACAATGTGGACAAGGAAATGCAAGGTTTGCTTGAAGGACTTAGCTATATGCCGGGATTTTATTATGAGAAAAAAGTGTCATATGTTGAGTTCTTGAATAGAGTCAGAAGTGGAGAGTTGAAGCTTCAGTCACAAAGACAATGGGATGTTCCTCATCCATGGCTTAATTTGTTTATACCCAAATCTCAAATCATGGATTTTGATTCCGGCGTATTCAAGAATATCATTTTCAAACGAAACATCACCACAGGACCTGTCTTGATTTACCCCATGAATAGAAGCAAGTGGGACAAAAGAATGTCAGCATCTATACCAGAGGAGGATATCTTTTATACAGTTGGATTTTTGCACTCAAGTGGATTTGATAATTGGAAGGCATTTGATGCTCAAAACAAAGAAATCTTGAAATTTTGTAATGATGCTGGAATTAAGGTTAAGCAATATCTTCCCCACTACAGCACACAAGAAGATTGGACAAAACACTTTGGCCCTAATAAATGGAGGACTTTCTTGGAAAGAAAACTCCAATTTGATCCAAGAATGATTCTATCACCTGGACAGAGAATCTTCAACAAAGATTAA 1629 0.4359 MVENYLPAPTYFILLLITITRLISTVGNKTEHLNNNSLLSSDLISRHNLHDDPESLESASRDFGNLVHHLPPAVFHPRSPQDIASLVKTSYESPAPFTISVKGQGHSTRGQAMARGGVVVDMRALREENNSNKKKNIRVIWREEGYYGDVGGEALWADVLREAAEMGVAPASWTDYLYLTVGGTLSNGGISGQSFKYGPQISIVHEMDVITGKGELVTCSSHTNSELFHAVLGGLGQFGIITRARIALHPAPKMVKWVRLLYNDFSAFTKDQERLISINGRKHNNNDNNDDNVALDYVEGMLLMHQGPINNWRSSFFPLADHPRIISLVTQHSILYCLELAKYYDEKSENNVDKEMQGLLEGLSYMPGFYYEKKVSYVEFLNRVRSGELKLQSQRQWDVPHPWLNLFIPKSQIMDFDSGVFKNIIFKRNITTGPVLIYPMNRSKWDKRMSASIPEEDIFYTVGFLHSSGFDNWKAFDAQNKEILKFCNDAGIKVKQYLPHYSTQEDWTKHFGPNKWRTFLERKLQFDPRMILSPGQRIFNKD* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1193 542 SUPERFAMILY FAD-binding/transporter-associated domain-like 44 251 IPR036318 GO:0050660
Amo03g1193 542 SUPERFAMILY FAD-linked oxidases, C-terminal domain 252 540 IPR016164 GO:0003824|GO:0050660
Amo03g1193 542 Gene3D - 52 539 IPR016167 -
Amo03g1193 542 ProSiteProfiles PCMH-type FAD-binding domain profile. 67 251 IPR016166 GO:0071949
Amo03g1193 542 Pfam FAD binding domain 71 220 IPR006094 GO:0050660
Amo03g1193 542 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 71 106 IPR006093 GO:0016491
Amo03g1193 542 Gene3D - 122 253 IPR016169 -
Amo03g1193 542 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 252 539 IPR015345 GO:0009690|GO:0019139|GO:0050660
Amo03g1193 542 PANTHER CYTOKININ DEHYDROGENASE 3 19 540 - -
Amo03g1193 542 PANTHER GULONOLACTONE OXIDASE 19 540 - -
Amo03g1193 542 Gene3D - 254 497 IPR016170 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1193 Amo-Chr3 27700486 27704357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1193 K00279 - gmx:100804431 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2759 01 98350928 98354500 Amo03g1193 03 27700486 27704357 PCT
Amo03g1193 03 27700486 27704357 Amo01g2759 01 98350928 98354500 PCT