Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1146 ATGACAACACTAGTAACTAAGGTCCCTATTGGGTTTCTTTCTCTTCTCTTAATTATTACTATAGCTACCAAAGCTGCGGCTGGTAACTTCTATCAAGACTTTGAAGTAACATGGGGTGATAACCGTGCTAAGATCTTTAACGGTGGCCAGCTTCTTACACTGTCCTTGGACAGAGCCTCCGGCTCCGGATTTCGCTCCAAGAACGAGTATTTGTTTGCCAAACTTGACATGCAAATCAAACTCGTTCCTGGTAACTCCGCTGGCACCGTTACAACATACTATCTATCTTCATTGGGTGGGACACATGATGAAATAGACTTTGAATTTCTGGGGAACTTGAGTGGAGATCCGTACATTCTTCACACAAACGTATTCACGCAAGGGAGAGGGAACAGAGAACAGCAGTTCTATCTATGGTTCGACCCCACCGCCGACTTCCACACCTACTCAATTCTTTGGAATCCTCACAACATCATATTCTCTGTGGACGGCACACCAATAAGGGAGTTCAAGAATTTAGAATCAAGAGGGGTCCCATTCCCAAAGAACCAACCCATGAGACTATACTCAAGCCTTTGGAATGCTGATGACTGGGCCACAAGGGGTGGGCTTGTGAAGACAGATTGGGCCCATGCCCCATTCACTGCCTCATACAGAAACTTCAATGCACCACCAGCCCAATCATGGATGGGCCAGTCTCTTGATTCAACAGGCCTTGCAAGAATCCATTGGGTCCAAAAGAATTACATGATTTACAATTATTGCACTGATCTCAAACGCTTCCCACAAGGGCCTCCTCCTGAATGCTCACTTGCATGA 819 0.4591 MTTLVTKVPIGFLSLLLIITIATKAAAGNFYQDFEVTWGDNRAKIFNGGQLLTLSLDRASGSGFRSKNEYLFAKLDMQIKLVPGNSAGTVTTYYLSSLGGTHDEIDFEFLGNLSGDPYILHTNVFTQGRGNREQQFYLWFDPTADFHTYSILWNPHNIIFSVDGTPIREFKNLESRGVPFPKNQPMRLYSSLWNADDWATRGGLVKTDWAHAPFTASYRNFNAPPAQSWMGQSLDSTGLARIHWVQKNYMIYNYCTDLKRFPQGPPPECSLA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1146 272 PIRSF EndGlu_transf 225 272 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo03g1146 272 PIRSF EndGlu_transf 1 238 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo03g1146 272 Pfam Glycosyl hydrolases family 16 31 210 IPR000757 GO:0004553|GO:0005975
Amo03g1146 272 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 226 269 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo03g1146 272 ProSitePatterns Glycosyl hydrolases family 16 active sites. 104 114 IPR008263 GO:0004553|GO:0005975
Amo03g1146 272 Gene3D - 16 271 - -
Amo03g1146 272 CDD GH16_XET 25 269 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo03g1146 272 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 271 IPR013320 -
Amo03g1146 272 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 218 IPR000757 GO:0004553|GO:0005975
Amo03g1146 272 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 12 271 - -
Amo03g1146 272 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 12 271 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1146 Amo-Chr3 26096119 26097855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1146 6 272 Glycoside Hydrolase AT4G25810 66.667 3.52e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1146 K14504 K08235 gmx:100778237 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2783 01 98589939 98591744 Amo03g1146 03 26096119 26097855 PCT
Amo03g1146 03 26096119 26097855 Amo01g2783 01 98589939 98591744 PCT