Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2783 ATGCACATCATCGATCACTCATATACTTCTCTTGGCTTCTTTTGCTTCCTTCTCTCTCTCTATACATATTTGCCTCCTATTTTCCAACCAAATCAAATTAAGGGAACCATAATTAATATGGGGATTGAGGTACTTATTATTAATATTGTTCTCCTTATAGGGTTTGCGGTTGCTGCATCCGCAGGTAACTTCAACCAAGACTTTGAAATTACATGGGGTAATGACCGTGCCAAAGTCCTCAACAACGGACAGCTTCTGACGCTGTCCCTTGACAAGGCCTCCGGCTCCGGCTTCCGTTCCCGGAACGAGTACCTGTTTGGAAAGATCGACATGCAGCTTAAACTTGTTCCTGGTAATTCAGCAGGCACAGTCACAGCCTATTATCTAAGTTCACTTGGTGACACTCACGATGAGATAGACTTTGAATTTCTGGGGAACTTGAGTGGTGAACCATACACTCTGCACACGAATGTATTCACGCAAGGGAAAGGCAACAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCAAGGACTTCCATACGTATTCTCTTCTTTGGAATCCTCAAAGCATCATATTCTCTGTGGACGGCACACCAATAAGGGAGTTCAAGAATTGGGAATCAAAAGGAGTTCCATTTCCCAAGAATCAAGCAATGAGGATATACTCAAGTCTATGGGACGCAGAAGATTGGGCCACAAGGGGTGGGCTTGTGAAGACTGATTGGACCCAAGCCCCATTCACAGCCTCATACAAAGGCTTCAATGCACAAGCTTGTGTTTGGACCTCTTCTTCAGGCTCCTCTTGTTCTTCAAAACAAGGCCAATCATGGTTCACTCAGTCACTTGACTCAACTGGGCAAGCAAGAATCCAGTGGGTTCAGAAGAACTACATGATCTACAATTACTGCACTGATACCAAACGATTCCCACAAGGCCTTCCTCCTGAATGCACCCTTGCATGA 966 0.4503 MHIIDHSYTSLGFFCFLLSLYTYLPPIFQPNQIKGTIINMGIEVLIINIVLLIGFAVAASAGNFNQDFEITWGNDRAKVLNNGQLLTLSLDKASGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGDTHDEIDFEFLGNLSGEPYTLHTNVFTQGKGNREQQFHLWFDPTKDFHTYSLLWNPQSIIFSVDGTPIREFKNWESKGVPFPKNQAMRIYSSLWDAEDWATRGGLVKTDWTQAPFTASYKGFNAQACVWTSSSGSSCSSKQGQSWFTQSLDSTGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTLA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2783 321 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 42 320 - -
Amo01g2783 321 SUPERFAMILY Concanavalin A-like lectins/glucanases 63 320 IPR013320 -
Amo01g2783 321 Gene3D - 50 320 - -
Amo01g2783 321 CDD GH16_XET 59 318 IPR016455 GO:0010411|GO:0016762|GO:0042546
Amo01g2783 321 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 42 320 IPR044791 GO:0004553
Amo01g2783 321 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 58 252 IPR000757 GO:0004553|GO:0005975
Amo01g2783 321 ProSitePatterns Glycosyl hydrolases family 16 active sites. 138 148 IPR008263 GO:0004553|GO:0005975
Amo01g2783 321 Pfam Glycosyl hydrolases family 16 65 244 IPR000757 GO:0004553|GO:0005975
Amo01g2783 321 PRINTS Glycosyl hydrolase family 16 signature 96 114 IPR008264 GO:0004553|GO:0005975
Amo01g2783 321 PRINTS Glycosyl hydrolase family 16 signature 154 167 IPR008264 GO:0004553|GO:0005975
Amo01g2783 321 PRINTS Glycosyl hydrolase family 16 signature 172 189 IPR008264 GO:0004553|GO:0005975
Amo01g2783 321 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 275 318 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Amo01g2783 321 PIRSF EndGlu_transf 31 321 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2783 Amo-Chr1 98589939 98591744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2783 42 321 Glycoside Hydrolase AT4G25810 72.183 8.76e-153 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2783 K14504 - gmx:100807063 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2783 01 98589939 98591744 Amo03g1146 03 26096119 26097855 PCT
Amo03g1146 03 26096119 26097855 Amo01g2783 01 98589939 98591744 PCT