Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1116 ATGATCAAGGGGAAGGACATATACAATGTTATTGCAGGCATTGTGCCCTTGTACGTGGCCATGTTCTTAGGTTATGGCTCAGTTCGGTGGTGGAAGATCTTAACGCCGGAGCAATGCTCCGGCGTCAACCGTTTCGTGTCGATGTTCGCGGCCCCTTTCCTGGCATTTAAGTTCATATCGGCCAACAACCCTTACAAGATGAACTTCAAGTTCTTGGCGGGAGACTCGTTACAAAAGGTTTTCGTTATGGTTGTGCTTTATATATGGAATCTAACGAGATTCGGGAATATGGACACAYGCATAATTATCTATGCCCTTTTTGCTTTGCCTAATACCCTAGTCATGGGMATTCCCTTAATGGAAGCAATGTACGGAAAATTCTCTACACCTCTCATMACTCAAATTGTTGTCTTGCAAAGCGTCATATGGAACACCGTCTTGTTGATTCTGTTCGAGTATAGGGCGGCTAAAATCCTCATCCAAGAGCAATTCCCCGACAACACGGCCGCTATTGCCACAGTGACAATAGATCCGGACGTAGAGTCCCTAGGCGGGGAGTCTCTGCAAGCTGACACGGACGTAGGACACGATGGAAAGCTTCATGTGGTGGTGAGAAGATCAGCATCCGTATCATCTAATAATACATCTTACAAGTCTTTTGAATTGCCTTCCTCAGCCTTATCTAGGGCTTCTTCAAGTGTTAGTGAAATCCATTCTATTTACTCGGCTAGAGAAACCCCGTTAAGATATCCAAGCTTTGAGAGTCCTCATATTATTAATTTGCCAAAAAGCATGTCCGTTGGTACTGTTTTAGAAGAGGATTTCAAGAGGCCAAAGAAATTCTGGGGTGGAAATCGCAAAAATAATAGTAGAGTTTCCTCTATTTGTACCAATGACGACAGTGTTGGATCTTCTAACGTTGTTGTTGCTGTTCCACACCACAGTGCTGCCTCCAGAGATGAGCCTGATGAATTGACTGAAACTAAAGAAAATTCGAGAAGTTCTTTAAGTGGGAGCTGGAAGAAGATGGAGAATATTGAAGAAAATGTTGAAAACAAAAAGAAACAAATGCCATCTGCGAGGGTCATGACGAAGCTCATTACAGTAATGGCTTATAGGAAGCTCTCATGGAACCCTAATACATGGGCAAGTGTTGTTGGCATCACGTGGTCCCTTATAGCATACAGGTGTCACATCAAAATGCCGTCCATAATTGAAGGTTCCATTACAATAGTGTCAAATACCGGTTTGGGTATGGCTATGTTTAGTCTAGGTCTATTCATGGCATTACAACCAAAGATCATTGCTTGTGGAAAAAAGTGGGCAGCAATTTCTATGGGTGTTAGGTTCTTGGCTGGTCCGGCACTGATTGCTGCAACCTCAGCACCAATTGGTATCCGTGGAGATCTTTTACGAGTTGAAATTATTCAGGCTGCTCTACCCCAAGGTATCATTCCCTTTATATTTGCTAAAGAATACAATCTTTATCCAGATATCTTCAGTACTGCGTAA 1512 0.4292 MIKGKDIYNVIAGIVPLYVAMFLGYGSVRWWKILTPEQCSGVNRFVSMFAAPFLAFKFISANNPYKMNFKFLAGDSLQKVFVMVVLYIWNLTRFGNMDTXIIIYALFALPNTLVMGIPLMEAMYGKFSTPLITQIVVLQSVIWNTVLLILFEYRAAKILIQEQFPDNTAAIATVTIDPDVESLGGESLQADTDVGHDGKLHVVVRRSASVSSNNTSYKSFELPSSALSRASSSVSEIHSIYSARETPLRYPSFESPHIINLPKSMSVGTVLEEDFKRPKKFWGGNRKNNSRVSSICTNDDSVGSSNVVVAVPHHSAASRDEPDELTETKENSRSSLSGSWKKMENIEENVENKKKQMPSARVMTKLITVMAYRKLSWNPNTWASVVGITWSLIAYRCHIKMPSIIEGSITIVSNTGLGMAMFSLGLFMALQPKIIACGKKWAAISMGVRFLAGPALIAATSAPIGIRGDLLRVEIIQAALPQGIIPFIFAKEYNLYPDIFSTA* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1116 503 MobiDBLite consensus disorder prediction 316 330 - -
Amo03g1116 503 Pfam Membrane transport protein 10 503 IPR004776 GO:0016021|GO:0055085
Amo03g1116 503 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 266 - -
Amo03g1116 503 TIGRFAM 2a69: auxin efflux carrier 1 503 IPR014024 -
Amo03g1116 503 Coils Coil 343 363 - -
Amo03g1116 503 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 315 503 - -
Amo03g1116 503 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 315 503 IPR033526 GO:0010315|GO:0010329
Amo03g1116 503 MobiDBLite consensus disorder prediction 311 347 - -
Amo03g1116 503 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 266 IPR033526 GO:0010315|GO:0010329
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1116 Amo-Chr3 25163566 25167095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1116 1 503 Organic Solute Cotransporters AT1G23080 41.779 1.38e-145 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1116 K13947 - gmx:100788935 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2790 01 98649429 98652032 Amo03g1116 03 25163566 25167095 PCT
Amo03g1116 03 25163566 25167095 Amo01g2790 01 98649429 98652032 PCT