Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2790 ATGATCACGGGTAAGGATATTTACGATGTGTTTGCAGCTATTGTGCCACTCTATGTGGCTATGATCTTAGCATATGGTTCTGTTCGGTGGTGGAAGATCTTCACGCCGGACCAATGCTCCGGGATTAACCGCTTCGTTGCGGTCTTTGCAGTTCCACTCCTCTCTTTCCACTTCATCTCCTCCAATGACCCTTACGCCATGAACTACCACTTCATAGCAGCCGATTCTCTTCAGAAGCTTGTCATCTTGGCTGCGCTTTTTCTATGGAACACCTTCACAAAACACGGTACCTTGGATTGGACAATCACCCTCTTCTCACTCTCCACTCTCCCAAACACACTCGTCATGGGAATCCCTCTCCTCAAGGCCATGTACGGCGACTTCTCCGGCACCCTCATGGTCCAAATCGTTGTCTTGCAGAGCGTTATATGGTACACTCTCATGCTCTTCATGTTCGAATACAGGGGTGCTAAGCTTCTTATCTCCGAGCAGTTCCCGGAGACTGCAGGCTCCATCACCTCCTTCAGGGTTGACTCCGATGTGGTGTCCCTCAACGGCAGGGATCCACTGCAAGCGGATGCAGAGATTGGTGAAGATGGAAAGCTTCATGTTGTGGTGAAGAGATCAGGTGCTTCCTCCATGATATCTTCCTTCAACAAGTCTCATTTAACTTCCATGACTCCTCGCGCTTCCAATCTCACCGGTGTTGAGATCTATTCCGTTCAATCATCCAGGGAACCAACACCCAGAGCTTCCAGTTTCAATCAAACGGACTTCTTCGCCATGTTTAATGCAAGCAAAGCACCCAGTCCCAAACACGGTTACACCAATGGCGAGTACTCCAAAGGAGCGACTCCGAGGACATCGAATTTTGAAGAGGAGATAACGATGAAGATGCATAATAAGAAAAGAGGAGCGAGGAGCATGAGTGGCGAACTGTTCAACTCTTCTTATCCGCCTCCGAACCCTATGTTTTCAGGATCTACAAGCGGCTTAAAGAAGAAAGATGGCGGCGGCAGCGGAACTACTCCTCCTAACAACAAGGAGTTGCACATGTTTGTATGGAGTTCAAGCGCTTCCCCAGTCTCTGAGGGGAATCTCAGACAAGCTGTTCATAGTGCTGCATCTACTGATTTTGATAAGGCGGTTACACCAGAGACTCTTGCCTCCAAAGCTGTGCAAGAGTTGATTGAGAACATGAGTCCAGCACGTAGAGAGGCGGAGATTGAGGAAGGAGGAGGGAAGAAGGTGGTGGAGATGGAAGAAGGAGATGCAAAGAAGAAGCAACACATGCCGCCGGCAAGTGTGATGACAAGGCTCATCCTCATCATGGTTTGGAGGAAACTGATTAGAAATCCAAATACTTATTCAAGCCTTTTGGGACTCACATGGTCTCTCATATCATTTAGATTTCACATAGAAATGCCGAGTATTGTAAAAGGATCCATATCTATACTCTCTGATGCAGGTCTTGGAATGGCCATGTTCAGTCTAGGTCTGTTCATGGCATTGCAGCCGAAGATAATTGCATGTGGAAAATCTGTTGCGGCGTTTTCTATGGCAGTTAGGTTCTTGACAGGTCCAGCTGTGATTGCTGCTACCTCCATTGGCATTGGTATTCGAGGAGTTCTACTGCATGTTGCAATTGTTCAGGCTGCACTTCCCCAGGGTATTGTTCCCTTTGTGTTCGCCAAAGAATACAATCTCCACGCGGATATCCTCAGCACTGCGGTTATATTTGGAATGCTGGTAGCATTGCCCATAACAATTCTTTACTACGTGCTCCTTGGACTCTAA 1797 0.4769 MITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFISSNDPYAMNYHFIAADSLQKLVILAALFLWNTFTKHGTLDWTITLFSLSTLPNTLVMGIPLLKAMYGDFSGTLMVQIVVLQSVIWYTLMLFMFEYRGAKLLISEQFPETAGSITSFRVDSDVVSLNGRDPLQADAEIGEDGKLHVVVKRSGASSMISSFNKSHLTSMTPRASNLTGVEIYSVQSSREPTPRASSFNQTDFFAMFNASKAPSPKHGYTNGEYSKGATPRTSNFEEEITMKMHNKKRGARSMSGELFNSSYPPPNPMFSGSTSGLKKKDGGGSGTTPPNNKELHMFVWSSSASPVSEGNLRQAVHSAASTDFDKAVTPETLASKAVQELIENMSPARREAEIEEGGGKKVVEMEEGDAKKKQHMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLTWSLISFRFHIEMPSIVKGSISILSDAGLGMAMFSLGLFMALQPKIIACGKSVAAFSMAVRFLTGPAVIAATSIGIGIRGVLLHVAIVQAALPQGIVPFVFAKEYNLHADILSTAVIFGMLVALPITILYYVLLGL* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2790 598 MobiDBLite consensus disorder prediction 315 345 - -
Amo01g2790 598 Pfam Membrane transport protein 10 593 IPR004776 GO:0016021|GO:0055085
Amo01g2790 598 TIGRFAM 2a69: auxin efflux carrier 1 598 IPR014024 -
Amo01g2790 598 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 598 - -
Amo01g2790 598 PANTHER AUXIN EFFLUX CARRIER COMPONENT 2 1 598 IPR033526 GO:0010315|GO:0010329
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2790 Amo-Chr1 98649429 98652032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2790 102 598 Organic Solute Cotransporters AT5G57090 71.245 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2790 K13947 - gmx:100305383 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2790 01 98649429 98652032 Amo03g1116 03 25163566 25167095 PCT
Amo03g1116 03 25163566 25167095 Amo01g2790 01 98649429 98652032 PCT