Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1112 ATGATGTACGAACACACACATAATCATCTGGTTCATCATCAGCAACCAGTAACGATGACTATGGATACCATGAAGATGGATATGATAAGAAGGAATAAGAGGGAGAGGAACAAAGAATCCAACAACAACAACAACAACAGCAACAACAACAAAGACAACAAGCTTCGCACCGTTGACTTGAGCTGCATGTCGTTGGAGTCTCTCCCTATTCCTTCTCTTGATTTAGCTACCATTTCCAAGTTGGACCTTTCCAACAACAATCTCCAGAATATTCCGGAGTCGTTAACGGCGAGACTACTGAACTTGACGGTGTTGGACGTGCACTCGAACCAGCTAAGGTCCCTCCCAAATTCAATTGGTTGCCTCTCTAAGCTTAAGATTTTGAATGTCTCTGCCAACTTCATCCAATCCCTTCCTCAAACTATTGAAAATTGCAGAGGCTTAGAAGAACTGAATGCTAACTTCAACAAGTTAAGCAAGTTGCCGGATACAATAGGGTTTGAGCTGATAAACCTCCAGAAGCTCTCCGTCAACTCCAACCAGCTTGTGTTCCTTCCAAGCTCCACCTCTCACCTTATGGCTCTCAAGGTCCTCGACGCGCGCCTTAACTGCTTAAGGTCTCTTCCCGAAGACCTTGAGAACCTAGTCAACCTTGAGACGCTGAATGTGAGCCAGAACTTCCGGTACTTGGACACACTACCCTACTCCATAGGGCTTCTATTGTCCCTCACTGAGCTTGATGTTAGCTACAACAACATCAAGACTTTGCCCAATTCCATTGGGTGCCTCCAGAAGCTCCAGAAGTTGTGTGTTGATGGGAACCCGCTTGCTTCGCCGCCATTGGAGGTGGTTGAGCAAGGGTTAAATGTGGTGAAGGAGTTCTTGTGTCATAAGATGAACTCGTCAGGGGACCAGAGTAGCAGAAAGAAGAAGTCGTGGGTCAAGAATTTCGTCAAGTGTGGAACATTCCAAGGACGCATCAATAGTGGTATGAAACGGCCGCAACATGACGGTTTCACCAAGCTTAAGCATCAGTCCATCCATGGTCTCGCCTCGCCTGGTGGCTTCATGGGGATGCTCTCACCTCTTCGCATCTTCTCACCTCGTCGTTCCTTTAGTTGA 1122 0.4688 MMYEHTHNHLVHHQQPVTMTMDTMKMDMIRRNKRERNKESNNNNNNSNNNKDNKLRTVDLSCMSLESLPIPSLDLATISKLDLSNNNLQNIPESLTARLLNLTVLDVHSNQLRSLPNSIGCLSKLKILNVSANFIQSLPQTIENCRGLEELNANFNKLSKLPDTIGFELINLQKLSVNSNQLVFLPSSTSHLMALKVLDARLNCLRSLPEDLENLVNLETLNVSQNFRYLDTLPYSIGLLLSLTELDVSYNNIKTLPNSIGCLQKLQKLCVDGNPLASPPLEVVEQGLNVVKEFLCHKMNSSGDQSSRKKKSWVKNFVKCGTFQGRINSGMKRPQHDGFTKLKHQSIHGLASPGGFMGMLSPLRIFSPRRSFS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1112 373 ProSiteProfiles Leucine-rich repeat profile. 101 122 IPR001611 GO:0005515
Amo03g1112 373 ProSiteProfiles Leucine-rich repeat profile. 242 263 IPR001611 GO:0005515
Amo03g1112 373 SMART LRR_typ_2 75 98 IPR003591 -
Amo03g1112 373 SMART LRR_typ_2 169 191 IPR003591 -
Amo03g1112 373 SMART LRR_typ_2 99 121 IPR003591 -
Amo03g1112 373 SMART LRR_typ_2 240 263 IPR003591 -
Amo03g1112 373 SMART LRR_typ_2 146 168 IPR003591 -
Amo03g1112 373 SMART LRR_typ_2 122 145 IPR003591 -
Amo03g1112 373 SMART LRR_typ_2 192 215 IPR003591 -
Amo03g1112 373 ProSiteProfiles Leucine-rich repeat profile. 77 98 IPR001611 GO:0005515
Amo03g1112 373 Pfam Leucine rich repeat 78 133 IPR001611 GO:0005515
Amo03g1112 373 MobiDBLite consensus disorder prediction 35 54 - -
Amo03g1112 373 Gene3D Ribonuclease Inhibitor 166 295 IPR032675 -
Amo03g1112 373 Gene3D Ribonuclease Inhibitor 2 165 IPR032675 -
Amo03g1112 373 SMART LRR_bac_2 215 236 - -
Amo03g1112 373 SMART LRR_bac_2 75 94 - -
Amo03g1112 373 SMART LRR_bac_2 122 141 - -
Amo03g1112 373 SMART LRR_bac_2 192 211 - -
Amo03g1112 373 SMART LRR_bac_2 263 281 - -
Amo03g1112 373 SMART LRR_bac_2 145 164 - -
Amo03g1112 373 SMART LRR_bac_2 169 188 - -
Amo03g1112 373 SMART LRR_bac_2 240 259 - -
Amo03g1112 373 SMART LRR_bac_2 99 118 - -
Amo03g1112 373 Coils Coil 30 50 - -
Amo03g1112 373 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 2 359 - -
Amo03g1112 373 SUPERFAMILY L domain-like 41 285 - -
Amo03g1112 373 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1112 Amo-Chr3 25021360 25025273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1112 74 279 Receptor kinase-like Gene Family AT5G46330 34.272 5.71e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1112 - - gmx:100776295 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2791 01 98654868 98656447 Amo03g1112 03 25021360 25025273 PCT
Amo03g1112 03 25021360 25025273 Amo01g2791 01 98654868 98656447 PCT