Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2791 ATGTTGTACGTGCAACAGCAGCCGATGATTAAGAAGGCGGAGAGGAGCGGCGGCAGCAGCAGCAGCTGGAGCAGAGGCATAGAGGAAGAGAGGCTTGAGATTGTGGACCTCAGTGGCATGTCTTTGGACTCCCTTCCCAACCCTTCTCTTAACTTGGCCATCATTTGCAAATTGGTGAATTTGGTGGTGCTGGATGTGCACTCGAACCAGCTTAGAAGGCTGCCAAACTCCATTGGCTGCCTGTGTAAACTGAAGGTCTTGAATGTGGCTGGAAACATGATCCAATACCTTCCAAAAACCATTGACAATTGCAAATCATTGGAGGAACTAAACGCCAACTTCAACAAACTGATACAGCTTCCAGAAAATATTGGTTTGGAACTCAGAAAGCTGAAGAAGTTATCAGTAAACTCCAATAAACTACTCTTCCTTCCACGCTCCACCTCAAACCTCACCTCTCTCAAGCTCCTGGACGCCCGCCTCAACTGCCTCCGCTCTCTCCCCGAAGACCTCGAAAAACTCGTCAGCCTTGAAACCCTCAACATCAGCCAGAACTTTCACTTCCTCCGTTCTCTCCCTTGCTCCCTCGGTCTTATCTTCTCCCTCGTCGAACTCGACATCAGCTACAACAGAATCACCTCCTTGCCTCCTTCCATTGCCTGTCTCAACAAGCTCCAGAAGCTTTGTGTCGATGGTAATCCGCTCATGTCGCCGCCACTAGAAGTGGTGGAACAAGGCTTATATGCCGTGAAGGGGTACCTCTATCAGAAGATGAACTCTTCGTCGTCGTCGTCGTCGTCGGAGAGCCCGTCAACGAAGAAGAAGTCATGGGTTGGGAAGTTGGTGAAGTACAAAACGTTCAATGGAGGAGAAACAAAGAGGAGGAGCAGCCATGAAGAATGCGAAGGTTTCGTAATGCCGGATTATAAGCCCATTGATAGTCTTGCTTCACCGCGTTACATGGGAATCTTCTCGCCTCGCCGCCTCTTCTCGCCTCGTAATTACTTCACCAAC 1014 0.4961 MLYVQQQPMIKKAERSGGSSSSWSRGIEEERLEIVDLSGMSLDSLPNPSLNLAIICKLVNLVVLDVHSNQLRRLPNSIGCLCKLKVLNVAGNMIQYLPKTIDNCKSLEELNANFNKLIQLPENIGLELRKLKKLSVNSNKLLFLPRSTSNLTSLKLLDARLNCLRSLPEDLEKLVSLETLNISQNFHFLRSLPCSLGLIFSLVELDISYNRITSLPPSIACLNKLQKLCVDGNPLMSPPLEVVEQGLYAVKGYLYQKMNSSSSSSSSESPSTKKKSWVGKLVKYKTFNGGETKRRSSHEECEGFVMPDYKPIDSLASPRYMGIFSPRRLFSPRNYFTN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2791 338 MobiDBLite consensus disorder prediction 1 24 - -
Amo01g2791 338 ProSiteProfiles Leucine-rich repeat profile. 201 222 IPR001611 GO:0005515
Amo01g2791 338 Gene3D Ribonuclease Inhibitor 4 245 IPR032675 -
Amo01g2791 338 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 21 331 - -
Amo01g2791 338 SUPERFAMILY L domain-like 30 240 - -
Amo01g2791 338 Pfam Leucine rich repeat 129 185 IPR001611 GO:0005515
Amo01g2791 338 ProSiteProfiles Leucine-rich repeat profile. 60 81 IPR001611 GO:0005515
Amo01g2791 338 PANTHER LEUCINE-RICH REPEAT-CONTAINING 21 331 - -
Amo01g2791 338 SMART LRR_bac_2 128 147 - -
Amo01g2791 338 SMART LRR_bac_2 58 77 - -
Amo01g2791 338 SMART LRR_bac_2 174 195 - -
Amo01g2791 338 SMART LRR_bac_2 81 100 - -
Amo01g2791 338 SMART LRR_bac_2 151 170 - -
Amo01g2791 338 SMART LRR_bac_2 201 218 - -
Amo01g2791 338 SMART LRR_bac_2 104 123 - -
Amo01g2791 338 SMART LRR_typ_2 199 222 IPR003591 -
Amo01g2791 338 SMART LRR_typ_2 81 104 IPR003591 -
Amo01g2791 338 SMART LRR_typ_2 58 80 IPR003591 -
Amo01g2791 338 SMART LRR_typ_2 105 127 IPR003591 -
Amo01g2791 338 SMART LRR_typ_2 151 174 IPR003591 -
Amo01g2791 338 SMART LRR_typ_2 128 150 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2791 Amo-Chr1 98654868 98656447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2791 22 236 Receptor kinase-like Gene Family AT1G12460 32.159 4.76e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2791 - - gmx:100783239 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2791 01 98654868 98656447 Amo03g1112 03 25021360 25025273 PCT
Amo03g1112 03 25021360 25025273 Amo01g2791 01 98654868 98656447 PCT