Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1097 ATGCGCTCAGGAGGTTGTACATTGCAACAGACGCTCACAGCGGAGGCGGCTTCAGTGGTGAAGCACGCGCTGGTGTTGGCGCGTAGGAGAGGCCATGCACAGGTGACCCCTCTCCACGTGGCCGCCACTTTGCTGTCTCTGAGAGCCAGCTCTCTCCGCCGAGCATGCCTCAGATCTCAATTTCCCAACCACCAGCAACACCCTCTTCAGTGCAGGGCGCTTGAGCTTTGCTTCAATGTCGCTCTCAATAGACTCCCTACCACAACGCCAACGCCGCCTAACTTTCTCAGCGTTAATCCCTCTCTTTCCAATGCTCTCATTGCTGCGCTTAAACGAGCCCAGGCTCACCAGCGACGTGGCTGCATTGAGCAGCACCAACAGCAGCCTCTTCTTGCTATCAAAGTTGAGCTTGAACACCTTATTATTTCCATTCTTGATGATCCTTCTGTTAGTCGGGTCATGAGAGAAGCTGGATTTTCCAGCACCGCTGTTAAGACTAATATTGAAGATTCTTCTTCTTCTTCTTCTCCAACTTCTCATTCCTCTTCTGCTGCTGGACCTTGTTCTGTTTTCTACTCCAACAACACCAACACTTTCAGCACTCTCAGGCAGACCCTCAAGCACCAGCACCATCATTTCTTGGGTGGTAATTCTTCTGAGTACCTTCCATCTTCAGCAATGCTGTTTTCCCCTCAGCACAAGTCTTGCAACAAGGAAGACATGATGGCGGTTCTTAATGCGCTGTTAAGCAAGAAGAGGAACACTGTGATAGTTGGCGACTCTTTGTCGATAAGCGAGGCAGTGATGGCGGAACTGATGGTGAAGCTTGAAAGAGGCCATGTACCTGATGAGCTGAAGAACACAGAGTTGATCAAGTTCCAATTCTCAGGGCAGATGAAAAGGGAGGAAGTGGAAATGAAGWTCGCAGCACTGAAGAGAAAAGTAGAAGGAGGAGGTGCCATTTTCTATGTTGGGGACTTGAAGTGGACGGTGGAAGGTGAAGGAGGAGGAGAAGTTGAACATGTAGTACAAGAGATTGGGAAGTTGTTTAATGAAAAGAATAGTAATAATAAGAAGGTGTGGCTAATGGGAACAGCGAGTTACCAAACATATATAAAGTGTCAAAGAAGGGAGCCACCTCTTGAGAACCACTGGGCTCTTCAGCCTGTTCCTGTTCCATCATCAGCTCGACTTGCCTTGACTCTCCATGCTACTTCCAGTGTGTATYATTCGAAGATGAGCATGCCCCACAACTCTTCTCACATGTTTGACATAATGCACTTGAGTAACAAGAAGGAGGACGACGAGGAAGAAAAACTGAATTGTTGTGAAGAATGTGCGTCCAATTATGAAAAAGAACTTGGGTTGTTCAAGCCAGGACACAAGAAACTCTTGCCTTCTTGGCTTCAGACACATACCACCGAATCCTATCAGAAGGATGAATTGGGAGAGCTGAAGAGAAAATGGAACAGACTTTGCAACTGTCTCCACCATAGCAAACAACTTGGGCAATATGGTAACAATAACAATGCAAAGATCTATCCTTACAATTCGTCATACCCATGGTGGCCAAATCAAAACACTCTCTTCCCAGATTCAAATTCAACTTCCATATCTTTTGCTGATCCTGTTCTGCCTCATCATCATCATCATAACTCCAACAACAACCACCACCACCACCACCTGGTGCCGCGGTTCCGGCGCCAACAATCATGCTCTACCATTGAGTTCAATTTCACCGAGGTCACTCAGAAAAAACAAGAATCAATAACAAGATCAGCCACCTTGGACAATCAAGAAGTAAATATTTCTCTGGCTCTTGGAAATTCAAKTTTCAGAGATGATGATGGTTCGGGCCAAACACTGGTACTTCAAAGTAGAGCTCATATTTGTAAAGTGTTGCAGGAAAATGTRCCATGGCAATCTGAAACACTTCCTTCAATAGCAGAGGCCTTGGTTGAACTTGATTCAGGAATAACAACAAAGAAACAATGGTTTCTTTTGCAGGGGAATGACTTTGTTGGCAAAACAAGGTTGGCGCGTGCCATCGCTGAATCCGTGTTTGGATTCGGCCTTGTGGATAATCATGATGATGTTTTCCTTCACTTGGATATGAAGAAAGTGGGGCATTCTTCTGTTACCATATTTCCTGAAGTTCTTGCTACATCACTGAGAACCAAAGAGAAGGTTGTTGTTTTAATTGAAGATTTCGATTTGGCCGATTCCCGGTTCAAGAAGTTTGTTGGTGATGAGTTTGAGGCATCAAAGTTTGGGAATTTAAGCAAAAAAGACGAGAATCTAAAGCAAGCTATATTCATTTTGACTTCGGGTGGGGTCGACGGCGATGAGGTGATCAAGAACAAGGACAAGGACTCATCGGTGATGAATTTGGTGTTCAAGATTGAAACCAAGGCTAGCACCATGGATTTTTCATCTTCATCATTGGCAGCTGATTGTTACTTGGGCCACAAGAAAAGAAGGGCTCATGAACTAGACTTGTTTGGAAAGATTAACAAGAGTCCAAGAATTGAAGAGAATGAAGAGAACTTGTTGCTTCAGGGACAAGTAAACAAGAAGAAAGACTTTTCAAGACAATCGAGTTCCAATACCCTTGATCTTAACATGAAAGCAGATGAAGAAGACTACCATGATGGAGAAGAAGATGAGAGTAGCCCAATTTCAAGTGATTTAACCAGGGATACAATGGCTGAACACATGAACTCAAATGGGTTCCTTGAATCAATTGAGAACAGGTTTGAGTTCAACCAAAGTCCAGCTAGATTGAAAGAAAAAGAGGAATTTTTTTTGAACAAGATCAAAGAGTCTTTTGATGAGGTTTTTGAGAAGAAGATGGTGAAGTTCAATGTAGATGAAAAGGTGATAGAGGAAATTGGTGTTGGGTGTGGTAATTTTACTAACAGCGTGTTTGAGAAATGGCTGAAAGACATTTTTCAAAACAAGTTATTAGAGACAGTTATTAACTGTGATCATGGGAAGGAGGGTATAGTTTTTAATATTACACTTTGTTTGGGGGGTGGTAATGGTAAAGGATATAATAGTAAATTTGATAATAGTAGTGGGGGTGGTGGCGGGTTCATGAATTCATGTTTGCCCAAGAATATCCAAATTAACTACTTCATGGATTGA 3147 0.4337 MRSGGCTLQQTLTAEAASVVKHALVLARRRGHAQVTPLHVAATLLSLRASSLRRACLRSQFPNHQQHPLQCRALELCFNVALNRLPTTTPTPPNFLSVNPSLSNALIAALKRAQAHQRRGCIEQHQQQPLLAIKVELEHLIISILDDPSVSRVMREAGFSSTAVKTNIEDSSSSSSPTSHSSSAAGPCSVFYSNNTNTFSTLRQTLKHQHHHFLGGNSSEYLPSSAMLFSPQHKSCNKEDMMAVLNALLSKKRNTVIVGDSLSISEAVMAELMVKLERGHVPDELKNTELIKFQFSGQMKREEVEMKXAALKRKVEGGGAIFYVGDLKWTVEGEGGGEVEHVVQEIGKLFNEKNSNNKKVWLMGTASYQTYIKCQRREPPLENHWALQPVPVPSSARLALTLHATSSVYXSKMSMPHNSSHMFDIMHLSNKKEDDEEEKLNCCEECASNYEKELGLFKPGHKKLLPSWLQTHTTESYQKDELGELKRKWNRLCNCLHHSKQLGQYGNNNNAKIYPYNSSYPWWPNQNTLFPDSNSTSISFADPVLPHHHHHNSNNNHHHHHLVPRFRRQQSCSTIEFNFTEVTQKKQESITRSATLDNQEVNISLALGNSXFRDDDGSGQTLVLQSRAHICKVLQENVPWQSETLPSIAEALVELDSGITTKKQWFLLQGNDFVGKTRLARAIAESVFGFGLVDNHDDVFLHLDMKKVGHSSVTIFPEVLATSLRTKEKVVVLIEDFDLADSRFKKFVGDEFEASKFGNLSKKDENLKQAIFILTSGGVDGDEVIKNKDKDSSVMNLVFKIETKASTMDFSSSSLAADCYLGHKKRRAHELDLFGKINKSPRIEENEENLLLQGQVNKKKDFSRQSSSNTLDLNMKADEEDYHDGEEDESSPISSDLTRDTMAEHMNSNGFLESIENRFEFNQSPARLKEKEEFFLNKIKESFDEVFEKKMVKFNVDEKVIEEIGVGCGNFTNSVFEKWLKDIFQNKLLETVINCDHGKEGIVFNITLCLGGGNGKGYNSKFDNSSGGGGGFMNSCLPKNIQINYFMD* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1097 1048 Pfam Clp amino terminal domain, pathogenicity island component 135 171 IPR004176 -
Amo03g1097 1048 Pfam Clp amino terminal domain, pathogenicity island component 24 46 IPR004176 -
Amo03g1097 1048 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1011 - -
Amo03g1097 1048 PANTHER PROTEIN SMAX1-LIKE 5 1 1011 - -
Amo03g1097 1048 Gene3D - 620 821 IPR027417 -
Amo03g1097 1048 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Amo03g1097 1048 Gene3D - 9 174 IPR036628 -
Amo03g1097 1048 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Amo03g1097 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 778 IPR027417 -
Amo03g1097 1048 MobiDBLite consensus disorder prediction 863 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1097 Amo-Chr3 24265075 24269389 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1097 - - aip:107630350 1988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2799 01 98860865 98865455 Amo03g1097 03 24265075 24269389 PCT
Amo03g1097 03 24265075 24269389 Amo01g2799 01 98860865 98865455 PCT