Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2799 ATGAGAGCCGGATTGAGCACCATCCAGCAGACCTTAACTCCCGAGGCGGCAAGCGTCCTCAACCACTCCATCGCCGAGGCCGGCCGACGCAACCATGGCCAGACAACGCCGCTGCACGTGGCCGCCACGCTCCTAGCCTCGCCCTCGGGATTCCTGCGTCAGGCCTGCATAAAGTCTCACCCGAATTCATCGCACCCTCTTCAGTGCAGGGCACTCGAGCTCTGCTTCAGCGTTGCTCTCGAGCGCTTGCCCACTTCCCAGACCACAAACCCCTCCTCTGAGCCACCAATCTCCAACGCACTCATGGCGGCGCTGAAGCGAGCACAGGCGCACCAGCGCCGCGGCTACCCCGAGCAGCAGCAGCAGCCGCTCCTCGCCGTCAAAGTCGAGCTTGAGCAGCTCATCATATCCATCCTCGACGACCCAAGCGTCAGCAGAGTCATGCGCGAAGCAAGCTTCTCCAGCCCCGCCGTGAAAGCCACAATCGAACAGTCCCTCAATTCCGCGTCTCCGGCGGTCAATTCCAGTCCAATCGCTCTTGGATTCCGCCCCTCTCCCGTGGCTCCTTCAGCGGCTCCGGCGGGGAGGAGCCTTTACTTGAACCCAAGGCTGCAGCAAGCGGGTGCCGGTACCGGTTCCGGTGTTCAATTGGGGGTGCCGCAGCAGAAGGGGGAGGAGGTGAAGAGGGTTTTGGATATATTGATGAGGAAGAAAAAGAGGAACCCGATCTTGGTGGGTGAGTCGGAGCCAGAGGCAACGGTGAGGGAGGTTCTGAGGAAGATTGAGAGCAAGGAGCTGGGAGAAGGTACGCTCGGGATTGTTGGGTTGAATACGCACGTGATTCATTTGGAGAAGGAGCTTCCCGCCGAGAGGGCGCAGATTCCGGCGAGGTTGAAGGAGTTGGGGGATATGATTGAGGCCCGGATTGGGTCGACGGGCTCTGGAGGCGTTTTTGTGAATTTAGGTGACTTGAAGTGGCTGGTGGAGCAGCCTGTTGGGTTCGGAGCTGTTGGTGGTGGTCACGTGCAGCAGGCGAATGTTGCGGAGGCGGGGCGTGCTGCTGTGGCGGAGATGGGGAGGCTGGTGGCGAAGTTCGGTGAGGGCGGCTCCGGAAGGCTGTGGTTATTGGGCACTGCTACCTGTGAGACATACTTGAGGTGCCAGGTTTATCATCCTTCCATGGAGAATGATTGGGATCTTCAGGCTGTTCCTATTACCAGCAGAGCCCCCCTCCCTGGAATGTTCCCTAGGCTTGGGACCAACGGTATCCTTGGTACCTCAATCGAATCCTTGTCCCCGTTGAAGCCCTTCCCAACTACGGCAATTGCTCCACCCAGGCGCGCCTCTGAGAACACAGAACCCACAGGAATATCGGGTTGTTGCCCACAATGCATCCAGAGCTATGAACAGGAACTAGCAGATATGTTAAAGGACAATGAGAAACTGGATGCCGAATCCAAATCAGAGGCAGCTCGACCATCGCTTCCCCAGTGGTTGCAGAAGGCTAAAACTAATAATGATAATGCTAAAGTCATCGACCAATCTCAGTGCAACGGCCAAGAAATGAATGTGAAAAAGAGGACACAGGAATTGCAGAAGAAATGGCAGGATGCTTGCTTGAGTCTACATCCCAAATTTCATCAGCAAAGTTTGAGTACAGAGAGAATTGTTCCCACTCCTTTTTCTATGAGAGGCCTATGCAATATGAACTTGTTGGGTGCCCAACTTCAGCCCAAGATACCACTCAACAAGAATCTGGGAAGCTCCTTGCAACTGAACCCAAATCCTGTGCCCATTCAGCCACCAGAACCAGCAGTCAGACAGCAGCCGAGTCTTGTCACAACAGAGCTCGTCCTTGGGCAAACTAAGAAATCAGATACCAGTACAGAAGAAACTCACAAAGAGCGCATTAATGACTTCTTGAACTGCATGTCTTCCGAGACACGAGACAAGTTTGATGAATTAAAGAGCAAGAAACTACTCGATGCTGACTCTTTCAAGAGGATCCTCAAGGGTTTGACAGAAAAAGTGTGGTGGCAGCAGGATGCAGCTTCTGCAGTTGCCACCACCGTGACCCAGTGTAAATTAGGCAACGGTAAAAGGCGCCAAGTCGGAGACAAGGGTGATATGTGGTTGCTGTTCTTGGGTCCCGACAGAGTAGGCAAGAAGAAGATGGCAGTAGCACTTTCCGAGCTGGTATCTTCCTCCAATCCAATTGTAATCTCTCTTGCCCAACGGCGTGGAGATGGAGACTCCGATGTCCATCTCCGTGGGAAAACAGCACTCGATCGAATTGCAGAGGCCATTAGAAGGAATCCGCAGTCTGTCATCATGCTCGAAGACATCGATGAAGCCAACGCCCTCCTTCGAGGGAGCATAAAACGGGCCATGGAGCAAGGTAGATTCCCGGATTCCCACGGCCGTGAAATTAGCCTTGGAAACGTCATGTTTTTCCTCACTGCCAATTGGTTGCCAGAGGACCTTAGGTACCTGTCCAACGGCACCCCACTTGACGAAGAAAAGCTTACAAATTTAGCCAGAGGGGGTTGGCAACTTCGTCTTTCAGTAGCTAAGAGAGCCTCAAAGCGGAGACCGAGTTGGTTATCTGAAGAAGACAGGTCCTTGAAGCCTCGTAAGGAAACAAATTTGAATTTAGGTCTATCATTTGATCTCAATGAAGCTGCTGATACAGAGGAAGACAGAGGAGACGGGTCGCTCAATTCTAGTGACCTGACAGTGGACCATGAAGACAACCATGTCCTCCACAATGCAGGATTACAGACACCCTCCGCCTCTGTACCCCGTGAGCTGTTGGATTCCGTGGATGATGCCATTGTGTTTAAACCATTGAATTTCGACCTTCTTCGAGCCAGTTTCTCTGCCTCCATCTCGAAAAGGTTTTCCACCATTGCCGGAAATGGGATTGCAATTGAAGTACAAGAGGGGGCTCTGGAGAAGATTGCGAGTGGGGTGTGGCTAGGCCAAACCAACATTACCGAATGGATGGAGAAAGTGTTGGTTCCCAGCTTCCACCAGCTGAAGAAAACCTTAAATTCTAGCGCTAATGACCATGAGTCTTCGCTGGTGGTGAGGCTCGAAGACGACGGCTACTCTGATCGTCAGAGCTCCGAGGAGTGGCTGCCTGCTGCTGTGAGAGTGGTAGCAGAAGAGTATTAA 3177 0.5313 MRAGLSTIQQTLTPEAASVLNHSIAEAGRRNHGQTTPLHVAATLLASPSGFLRQACIKSHPNSSHPLQCRALELCFSVALERLPTSQTTNPSSEPPISNALMAALKRAQAHQRRGYPEQQQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKATIEQSLNSASPAVNSSPIALGFRPSPVAPSAAPAGRSLYLNPRLQQAGAGTGSGVQLGVPQQKGEEVKRVLDILMRKKKRNPILVGESEPEATVREVLRKIESKELGEGTLGIVGLNTHVIHLEKELPAERAQIPARLKELGDMIEARIGSTGSGGVFVNLGDLKWLVEQPVGFGAVGGGHVQQANVAEAGRAAVAEMGRLVAKFGEGGSGRLWLLGTATCETYLRCQVYHPSMENDWDLQAVPITSRAPLPGMFPRLGTNGILGTSIESLSPLKPFPTTAIAPPRRASENTEPTGISGCCPQCIQSYEQELADMLKDNEKLDAESKSEAARPSLPQWLQKAKTNNDNAKVIDQSQCNGQEMNVKKRTQELQKKWQDACLSLHPKFHQQSLSTERIVPTPFSMRGLCNMNLLGAQLQPKIPLNKNLGSSLQLNPNPVPIQPPEPAVRQQPSLVTTELVLGQTKKSDTSTEETHKERINDFLNCMSSETRDKFDELKSKKLLDADSFKRILKGLTEKVWWQQDAASAVATTVTQCKLGNGKRRQVGDKGDMWLLFLGPDRVGKKKMAVALSELVSSSNPIVISLAQRRGDGDSDVHLRGKTALDRIAEAIRRNPQSVIMLEDIDEANALLRGSIKRAMEQGRFPDSHGREISLGNVMFFLTANWLPEDLRYLSNGTPLDEEKLTNLARGGWQLRLSVAKRASKRRPSWLSEEDRSLKPRKETNLNLGLSFDLNEAADTEEDRGDGSLNSSDLTVDHEDNHVLHNAGLQTPSASVPRELLDSVDDAIVFKPLNFDLLRASFSASISKRFSTIAGNGIAIEVQEGALEKIASGVWLGQTNITEWMEKVLVPSFHQLKKTLNSSANDHESSLVVRLEDDGYSDRQSSEEWLPAAVRVVAEEY* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2799 1058 PANTHER PROTEIN SUPPRESSOR OF MAX2 1 1 1054 - -
Amo01g2799 1058 SUPERFAMILY Double Clp-N motif 12 163 IPR036628 -
Amo01g2799 1058 Gene3D - 630 949 IPR027417 -
Amo01g2799 1058 MobiDBLite consensus disorder prediction 435 454 - -
Amo01g2799 1058 Gene3D - 9 168 IPR036628 -
Amo01g2799 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 990 IPR027417 -
Amo01g2799 1058 ProSiteProfiles Clp repeat (R) domain profile. 8 169 IPR004176 -
Amo01g2799 1058 Coils Coil 465 485 - -
Amo01g2799 1058 Pfam Clp amino terminal domain, pathogenicity island component 26 55 IPR004176 -
Amo01g2799 1058 Pfam Clp amino terminal domain, pathogenicity island component 129 166 IPR004176 -
Amo01g2799 1058 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1054 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2799 Amo-Chr1 98860865 98865455 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2799 - - aip:107641850 2029.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2799 01 98860865 98865455 Amo03g1097 03 24265075 24269389 PCT
Amo03g1097 03 24265075 24269389 Amo01g2799 01 98860865 98865455 PCT