Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0418 ATGCTCAGAAGCCATTCGATGAAATGCTTCATTAGATGTGTCAGCGCTCAAATTCCAACTCCATTTAAGGGATATGCTACTGCGAATTCAGAAAAGGTTTTACCTGTGAAGAAGAAAAAGAGGCTTGATGAAATATGTCTTGAAAAATATCAGCAATATAGCAGATCCATCATCCAGTCATGGATTTTGCAAGGCAAAGTATATGTCAATGGGAAGGTGATAAATAAAGCTGGTACTCCTGTGTCTGAGAAAGCTGTTGTGGAGATAATTGCTGAAGTTCCGAAATATGTATGTAGGGCGGGACATAAGTTGGAAGCTGCCATTGAACAACTTGGTGTCAATGTTGCTGGTAAAGTTGCTCTTGATTCTGGGCTGTCAACTGGAGGATTTACTGACTGCTTACTTCAGTATGGCGCATCACATGTTTATGGAGTTGATGTAGGCTATGGACAGGTGGCTGAGAAAATTCGTAGAGATGATCGAGTATCTATTATAGAGCGGACAAATTTAAGATATCTTACAGAACTCCCCCAAAATGTTGATTTGGTGACTTTAGACCTTTCATTCATCTCTATTCTCTTGGTCATGCCTGCTGTGGTTAATGTCATGAAGGAGGATGCAGCCTTAGTAACCTTAGTTAAACCACAATTTGAAGCTCGTAGGTCTCAGGTAGGAAAAGGGGGGATAGTGAAAGATCCTAGTATCCATCAAGAGGTTCTTGACAGGATTATAAAGGGAGTAGAGGATTTTGGTTTCTGCAGTAAGGGTTGGATTGAGTCCCCTCTCAAAGGTGCTGAGGGTAACACAGAATTCCTTGTTCACTTCACTAGAACCCCAAAATAA 843 0.4104 MLRSHSMKCFIRCVSAQIPTPFKGYATANSEKVLPVKKKKRLDEICLEKYQQYSRSIIQSWILQGKVYVNGKVINKAGTPVSEKAVVEIIAEVPKYVCRAGHKLEAAIEQLGVNVAGKVALDSGLSTGGFTDCLLQYGASHVYGVDVGYGQVAEKIRRDDRVSIIERTNLRYLTELPQNVDLVTLDLSFISILLVMPAVVNVMKEDAALVTLVKPQFEARRSQVGKGGIVKDPSIHQEVLDRIIKGVEDFGFCSKGWIESPLKGAEGNTEFLVHFTRTPK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0418 280 Pfam FtsJ-like methyltransferase 96 274 IPR002877 GO:0008168|GO:0032259
Amo02g0418 280 Pfam S4 domain 41 87 IPR002942 GO:0003723
Amo02g0418 280 SMART s4_6 40 105 IPR002942 GO:0003723
Amo02g0418 280 SUPERFAMILY Alpha-L RNA-binding motif 40 92 - -
Amo02g0418 280 TIGRFAM tly: TlyA family rRNA methyltransferase/putative hemolysin 41 270 IPR004538 GO:0003723
Amo02g0418 280 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 36 279 - -
Amo02g0418 280 ProSiteProfiles S4 RNA-binding domain profile. 40 100 - -
Amo02g0418 280 Gene3D Vaccinia Virus protein VP39 99 280 IPR029063 -
Amo02g0418 280 Gene3D - 29 96 IPR036986 GO:0003723
Amo02g0418 280 CDD AdoMet_MTases 121 200 - -
Amo02g0418 280 PANTHER BACTERIAL HEMOLYSIN-LIKE PROTEIN 36 279 IPR004538 GO:0003723
Amo02g0418 280 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 277 IPR029063 -
Amo02g0418 280 CDD S4 40 89 - -
Amo02g0418 280 PIRSF TlyA 35 280 IPR004538 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0418 Amo-Chr2 5175538 5183495 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0418 K06442 - gmx:100781303 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0743 19 11537293 11542921 Amo02g0418 02 5175538 5183495 hybridization