Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0143 ATGTCAGAAATTGACATGGCCGTTATTAAACCTGAGATGATGAAGTCATATATTTGGCTTCAGACTTCTGATGGTTCAATCCAACAAGTCGAACAAGAAATCGCAATGTTTTGCCCACTGATATGTCAAGAAATAATAACAAAAGGCATGGGTTCATCAAAGAATTCTGCAATATCTCTTCCTCAACAAGTCACCCCTTCTACGTTGAGCTTAATTCTTGATTATTGTCGCTTTCATCAAGTACCAGGCCGCTCAAACAAGGAACGGAAATCTCATGACGAGAAGTTCGTTAGGATGGGCACAAATAGGCTTTGTGAGTTGGTGTCTGCTGCAGACAGCCTTCAGTTAAGGCCATTGGTTGATCTCATCAGTCGTGCACTTGCTCGAAAAATTGAAGGAAGAACACCGGAGGAGATACGTGAAATATTTCATCTGCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCCTTGAAAAACATAACTGATGACCCAAGGATCAGACTTTTGAATCGTTTATATGCAAAAAAGAGGAAAGAACTAAAAGAGCGTGAAAGGTTAAAGAATGTCGAAATTGAAGAAGAGCGTGTAGATGAACGTTCAGTTGATGACCTTTTAACTTTCATTAATGGAAATGATAGAGATGCAAAGGCGGTTAAAACTTCAAAGAGTAAAAAGAAGAACCGGAAGAAAAAAGACCAACAGAAGAACTCTTCTTTGAAGGACAATACTGCACTGGATAAGAAGGAGTTAAATGGGCATGATACCGGTGACCAAAGTTCTGATGGAAATATAATTGGTGAGACATCAAATTTACTGTACGAAGAGGATGGCACCTTTTCTCCTAAGATTGACTTTGATGATGGAGATTTGGATGATGATGGGATTGAGCCTGCAATTAGGGAAAAAATTGACAGGGAGGTGGCAGATTTTGCTCGCAGAATAAATTCTGACTGGACAGAGAGGATGCAAGATTTTTTAACATCCGGGAGAGAGAGGACATCAACGTTTTCTGCTACCAATGGGAATGGTTATCTAAGGCGACATGCATGA 1053 0.4017 MSEIDMAVIKPEMMKSYIWLQTSDGSIQQVEQEIAMFCPLICQEIITKGMGSSKNSAISLPQQVTPSTLSLILDYCRFHQVPGRSNKERKSHDEKFVRMGTNRLCELVSAADSLQLRPLVDLISRALARKIEGRTPEEIREIFHLPDDLTEEEKLEPLKNITDDPRIRLLNRLYAKKRKELKERERLKNVEIEEERVDERSVDDLLTFINGNDRDAKAVKTSKSKKKNRKKKDQQKNSSLKDNTALDKKELNGHDTGDQSSDGNIIGETSNLLYEEDGTFSPKIDFDDGDLDDDGIEPAIREKIDREVADFARRINSDWTERMQDFLTSGRERTSTFSATNGNGYLRRHA* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0143 350 MobiDBLite consensus disorder prediction 216 266 - -
Amo02g0143 350 MobiDBLite consensus disorder prediction 235 256 - -
Amo02g0143 350 PANTHER SKP1 1 279 IPR016897 GO:0006511
Amo02g0143 350 Pfam Skp1 family, dimerisation domain 118 154 IPR016072 GO:0006511
Amo02g0143 350 Coils Coil 170 190 - -
Amo02g0143 350 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Amo02g0143 350 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Amo02g0143 350 Coils Coil 346 350 - -
Amo02g0143 350 SMART skp1_3 15 116 IPR001232 GO:0006511
Amo02g0143 350 PANTHER SKP1-LIKE PROTEIN 20 1 279 - -
Amo02g0143 350 SUPERFAMILY Skp1 dimerisation domain-like 91 160 IPR036296 GO:0006511
Amo02g0143 350 SUPERFAMILY POZ domain 16 80 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0143 Amo-Chr2 1763961 1769398 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0143 - - gmx:100794666 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3409 14 136860118 136862977 Amo02g0143 02 1763961 1769398 PCT
Amo02g0143 02 1763961 1769398 Amo14g3409 14 136860118 136862977 PCT