Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4172 ATGAAGACCACGAAGGGTGGCAAGGTCATGAATCCTACCGATGCTTATCGAAAGGAGCTTCGCAAGAAGGAATTGAAAAGGAATAAGAAGGAAAGGAAGAAGGTGAGGGAAGTGGGAATTCTTAAGAAAGATCCTGAACAGCTGAAGAAACAGATTGAGAACTTGGAAATGATGAAGGCTGATGGTGCTTTGGATAAGGCAAGAAAGCACAAGAAGAGACAACTACAAGATACACTTAACCTTGTCCTAAAGAAAAGGAGGGAATATGAAGATAAAATGAAGGAGAAGGGTGAGACCCCTGTTATGTTCAGTCATTTAGGGCCTCCCCGAAGAAGAACAACTGCAGAAGAAGAAGAGAGAGTTAAACACCCAAAGCCTGAGGATTCCGTTTATTACCATCCAACATTAAACCCTACAGGGGCTCCCCCACCTGGGAAACCTCCCATGTTTAAATCGTCTATAGGGCCCAGGATTCCCTTATCCGGTGCTTCATCGAGTACTGCTGCATCATCATCAGCAGCAGAGTCAGGGGATGATATGTTAACTGTACCTCCACCTCCACCGCCACCCCCACTGCCCGAAGCTGGCAGTTCAAGTTTGGCTGAGGACACTGCTTTACCTGCGGCATCTTTGCCTTTGCCTCCACCACCGCCCATGCCTCCAAAGCCTGCTACTACTGGACCTACATCATTACCACCACCTCCTTTGCCACCTCCACCTCCTGGTCCTCCACCTAAAGAGCAAGTTGCAAATCACCCGATCCCCCCTCCACCTCCACCCCTACCACAGTCTCAGCCACCGCCACCTGGCACTAGTGGAGGTGAAGAGCGAAACCAATCTTCATCCGCAGATGATTTGCCTTCTAAGGAGACTGGTCAGATGCAGCTCCCTCCACCCCCTCTGCCYKATCGGATGCCACAAAAGTCTGATGGTGCTTTAGCTACCACTGARAATACGAATTCTCTGCCAAGCCATGAGATCCCAAAAATGGTTCCTGGGCCTCCTCCTCCAAGGCAACAACCTCCTGTTCCAGGATCCACWTTAGTTCCAACTTTGCAGGCCGATGTTTTGCCTCCTGGAATATCCCGTTTTCCACCACCCCCACCACCACCTGATATGAGGCCTCCTTTACCAGTGGCTGGACTTCCTGGTCAGGCACCACCTCCTGGAATGATGGTCCCAATGATGCCTAGGCCCCCATATGGTCCTCCACCTGGGCCTCCTCCAATGATGAGACCACCACTTCCTCCTGGTCCTCCTCCAAGCTTCCAAGASGATGATCAAATGGCTTTTAGGCTACCTCCACCYCCTCCTCCTCCTCAAAAACCATCTTATGTTAAATCTGCTGCATCTACTGTTGTTAAAAGGCCATTAGCTCAGCACACACCAGAACTTACAGCTATGATTCCTGCATCTGTTCGGGTTAGAAGAGAGAATGCAGTGGCAAAATCCAAACCGAAACCGACAATATCAACCTCTACCTCTAGGACAGTCTCGGGGCCACCAACTATTGTAAAACCAGAGTCAGTGAGTTCATCATCGTCAGCTCCAAAAGCACAGAGCATAGATGATTCGTACACAGCTTTCTTGGAGGACATGAAAGCCCTTGGTGCACTTGATGGTTGA 1626 0.4963 MKTTKGGKVMNPTDAYRKELRKKELKRNKKERKKVREVGILKKDPEQLKKQIENLEMMKADGALDKARKHKKRQLQDTLNLVLKKRREYEDKMKEKGETPVMFSHLGPPRRRTTAEEEERVKHPKPEDSVYYHPTLNPTGAPPPGKPPMFKSSIGPRIPLSGASSSTAASSSAAESGDDMLTVPPPPPPPPLPEAGSSSLAEDTALPAASLPLPPPPPMPPKPATTGPTSLPPPPLPPPPPGPPPKEQVANHPIPPPPPPLPQSQPPPPGTSGGEERNQSSSADDLPSKETGQMQLPPPPLPXRMPQKSDGALATTENTNSLPSHEIPKMVPGPPPPRQQPPVPGSTLVPTLQADVLPPGISRFPPPPPPPDMRPPLPVAGLPGQAPPPGMMVPMMPRPPYGPPPGPPPMMRPPLPPGPPPSFQXDDQMAFRLPPPPPPPQKPSYVKSAASTVVKRPLAQHTPELTAMIPASVRVRRENAVAKSKPKPTISTSTSRTVSGPPTIVKPESVSSSSSAPKAQSIDDSYTAFLEDMKALGALDG* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4172 541 Coils Coil 13 33 - -
Amo01g4172 541 Pfam WW domain binding protein 11 7 83 IPR019007 GO:0006396
Amo01g4172 541 PANTHER WW DOMAIN-BINDING PROTEIN 11 2 540 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 209 269 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 270 289 - -
Amo01g4172 541 PANTHER WW DOMAIN-BINDING PROTEIN 11 2 540 IPR019007 GO:0006396
Amo01g4172 541 Coils Coil 72 92 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 311 325 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 89 451 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 478 525 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 110 129 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 1 32 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 158 177 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 328 344 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 181 195 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 360 423 - -
Amo01g4172 541 MobiDBLite consensus disorder prediction 485 522 - -
Amo01g4172 541 Pfam mRNA biogenesis factor 126 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4172 Amo-Chr1 117021780 117027781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4172 - - gsj:114393646 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4172 01 117021780 117027781 Amo11g2121 11 116499743 116505540 hybridization