Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3469 ATGGGTCTCATTAGTAGTAGCAACAACAAACGGCACCAACAGTGCATGAATTTGAATCGCATGTATCCGTCTCCGAATTCCTCAGATTCCCGCACATTAAAAAGAGCTAAGTTCCAATCAACGAGCATGAACTCAACTCCTTTAAGATCATCTCCCACTAGTACTGGTTCAAGAGTTTCCCGGTACCCAAATGCAGTGCTACCGTTGCATAGGGAGGTTCACGCTCCTTGCAGATCCAAAAAGTTCGGTCTTTTGAATATTTCAGGAACTCAGAAGGAGATTGGTAAGGGTAGGGGCAATGATGCGTTGCATAACAAGTACCGCGTGTACCAGCAGGCGAAGGATTCTGCACTTGCTTGCATTCGATTATTTGAAAAGCGCAAGGAGGCGGCGCAAGTCGACACTGCTGGTCGCAACAAGGAGGTTTATGTCATAGAAGATGATGACGAAGAAGGACCATCCATTGTGACAGAACAGAGTTTGAAAGGGGATGATATGGCTTTGACTGGGATGCATGATTTTGATGCTAAGGATGTTGTAGGATTTTTGCAGCAATCAACTCCTTTGGTTTCTGAGTCCATAAATAGTAATTTGAATGTGGTTTATGCTGAGAGGACGCTGGACACTCTATCCTTAAGCCCCGAGCATCCGAAGAAGGAACCACTTGTAGAGCTAGTGTCACTGAAACCTTTTGTTCCTCTTACAAAGGAGGAAGAAGATGAGGTTGCACGTGCCTTTTCTGCTGACAGGAAGAAGGTTTTGGTCACTCATTATAAATCCAACATTGAGATCACAGGCGGAACGTTTCAGTGCCTCAGGCCGGGTGGATGGTTAAATGACAAGGTCATAGATTTGTACCTGGTACTTCTGAAAGAGAGGGAGAGAAGGAAGGCAAAGAATTCTCTCCAATGTCATTTTTTCAGTACCTTTTTCTACACAAAGTTGATAAGTGGGAAGAATGGTTATGATTTCAACTCTGTAAGGAGATGGACCAGTCAAAAGAAACTGGGATACATCCCCCATGAATGCGATAAAATATTTGTACCTATTCATCGAACGTCTCATTGGTGTTTGGCTGTCATCAATCAAAAAGAGAAAAAATTCCAGTATCTTGACTCTCTGAGAGGAAAAGATACCCAAGTGCTGGAAGTGCTGGCTAGGTATTTTGTAGATGAAGTAAAGGACAAGACTGGAAAAGACACCGATGTAAGTTCTTGGGAGAAAGAATTTGTCAAAGACCATCCTAAACAATTGAATTGCTATGATTGTGGGATGTTTATGATCAAATATGCTGATTTCTACAGTAGAAATATGAGATTGTGTTTTGGCCAGGGAGACATGCCTTACTTCCGGCTTAGAACAGCTAAGGAAATCTTGAGACTAGAAGCTGACTAA 1395 0.4265 MGLISSSNNKRHQQCMNLNRMYPSPNSSDSRTLKRAKFQSTSMNSTPLRSSPTSTGSRVSRYPNAVLPLHREVHAPCRSKKFGLLNISGTQKEIGKGRGNDALHNKYRVYQQAKDSALACIRLFEKRKEAAQVDTAGRNKEVYVIEDDDEEGPSIVTEQSLKGDDMALTGMHDFDAKDVVGFLQQSTPLVSESINSNLNVVYAERTLDTLSLSPEHPKKEPLVELVSLKPFVPLTKEEEDEVARAFSADRKKVLVTHYKSNIEITGGTFQCLRPGGWLNDKVIDLYLVLLKERERRKAKNSLQCHFFSTFFYTKLISGKNGYDFNSVRRWTSQKKLGYIPHECDKIFVPIHRTSHWCLAVINQKEKKFQYLDSLRGKDTQVLEVLARYFVDEVKDKTGKDTDVSSWEKEFVKDHPKQLNCYDCGMFMIKYADFYSRNMRLCFGQGDMPYFRLRTAKEILRLEAD* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3469 464 Pfam Ulp1 protease family, C-terminal catalytic domain 277 458 IPR003653 GO:0006508|GO:0008234
Amo01g3469 464 Gene3D Adenoviral Proteinase; Chain A 231 462 - -
Amo01g3469 464 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 198 462 - -
Amo01g3469 464 SUPERFAMILY Cysteine proteinases 230 461 IPR038765 -
Amo01g3469 464 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 37 156 - -
Amo01g3469 464 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 198 462 - -
Amo01g3469 464 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 37 156 - -
Amo01g3469 464 ProSiteProfiles Ubiquitin-like protease family profile. 262 434 IPR003653 GO:0006508|GO:0008234
Amo01g3469 464 MobiDBLite consensus disorder prediction 18 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3469 Amo-Chr1 107276622 107280805 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3469 K08592 - gmx:100797013 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3469 01 107276622 107280805 Amo04g0358 04 6665551 6670632 PCT
Amo04g0358 04 6665551 6670632 Amo01g3469 01 107276622 107280805 PCT