Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2134 ATGATGGCAATGGATACAATGGTGGCAGAGGGTCCAAGAAGCCCAGAAGCGAAGCTTGGGTTGAGAGTGGAGGATCTTTGGGATGTTATGGAGCCACAGCTAAGTCCTACTGAGAAGCTTAATGCCTGCTTTGAAAGCATCCCAGTCTCTGCGTTCCCAATGGCTCCTTCAAACAAAGAACTTGAGATAAAATCAGATGCCACACTAGCCGAAGCTGTAAAAGTGCTGGCACGTCACAACATTCTGAGTGCACCTGTGGTGAATGTTCACGCACCTGAAGATGCAAGTTGGCTTGATAGATACATCGGAATAATTGAGTTTGCTGGAATTGCTGTATGGATTCTGCATCAGTCTGAACCTACAACTCCTACAAGTCCATCCACTCCAAACACTCCAACCAGTGCAAGTGCTATTGCAGCTAAAGCAAACGGATTAACCTTTGCTCTAGAACTTGAAAATTTAGGCCTTGGATCTGCTGCAACCACTTCAGGGAACTTCTTTGAGGATCTCATTTCTTCTGAACCTTACAAGAACACCAAGGTCTGCGATATTTCAGGGACGTTCCGGTGGGCTCCATTTCTTGCTTTGGAGAGATCAAACTCGTTTCTAACCATGCTGTTGCTGCTTTCTAAGTACAAGATGAAGAGTGTCCCTGTGGTGGATTTAGGTGCTGATAGAATTGACAACATTATTACACAATCTGCAGTGATTCATATGCTAGCGGAATGTGCCGGGCTTCAGTGGTTTGAAAGCTGGGGAACCAAGAGTCTATCTGAAGTCGGTCTTCCCTTGGTGACACCAGACCAAATCATCAAGGTATATGAGGATGAACCAGTGCTTCAAGCATTTAAATTGATGAGGAAGAAGAGGATTGGAGGGGTGCCTGTGATGGATAGGGATCAAGGCAAGGCAGTTGGTAACATAAGCTTGCGAGATGTTCAGTTCTTGCTAACTGCCCCAGAAATCTACCATGATTATAGATCTATTACAGTAAAGGACTTTGTGACAGCAGTTAGAAGCTACCTAGAGAAGAATAAAGATGCAAACCCAATGTCAAGTGAATTGGTTACATGTAAAATTGATTGCACGATCAAGGATCTGATTAAATTGCTTGATGATGAGAAGATTCATCGGGTCTATGTCGTGGATGATGATGGGAATCTACAAGGACTTATCACGCTGAGGGATATCATCTCAAGGCTAGTACACGAGCCACGTGGCTATTTCGGTGATTTCTTTGATGGCGTTCTTCCCCTGCCTCTGGATTGCCGGGTTTGA 1278 0.4468 MMAMDTMVAEGPRSPEAKLGLRVEDLWDVMEPQLSPTEKLNACFESIPVSAFPMAPSNKELEIKSDATLAEAVKVLARHNILSAPVVNVHAPEDASWLDRYIGIIEFAGIAVWILHQSEPTTPTSPSTPNTPTSASAIAAKANGLTFALELENLGLGSAATTSGNFFEDLISSEPYKNTKVCDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGADRIDNIITQSAVIHMLAECAGLQWFESWGTKSLSEVGLPLVTPDQIIKVYEDEPVLQAFKLMRKKRIGGVPVMDRDQGKAVGNISLRDVQFLLTAPEIYHDYRSITVKDFVTAVRSYLEKNKDANPMSSELVTCKIDCTIKDLIKLLDDEKIHRVYVVDDDGNLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPLDCRV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2134 425 SMART cbs_1 59 115 IPR000644 -
Amo01g2134 425 SMART cbs_1 269 318 IPR000644 -
Amo01g2134 425 SMART cbs_1 354 402 IPR000644 -
Amo01g2134 425 SMART cbs_1 192 241 IPR000644 -
Amo01g2134 425 CDD CBS_pair_SF 206 313 - -
Amo01g2134 425 SUPERFAMILY CBS-domain pair 229 411 IPR046342 -
Amo01g2134 425 ProSiteProfiles CBS domain profile. 54 121 IPR000644 -
Amo01g2134 425 Gene3D - 43 245 IPR046342 -
Amo01g2134 425 ProSiteProfiles CBS domain profile. 351 409 IPR000644 -
Amo01g2134 425 Pfam CBS domain 351 402 IPR000644 -
Amo01g2134 425 Pfam CBS domain 269 313 IPR000644 -
Amo01g2134 425 Gene3D - 254 404 IPR046342 -
Amo01g2134 425 CDD CBS_pair_SF 268 398 - -
Amo01g2134 425 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 9 425 - -
Amo01g2134 425 SUPERFAMILY CBS-domain pair 32 241 IPR046342 -
Amo01g2134 425 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 9 425 - -
Amo01g2134 425 ProSiteProfiles CBS domain profile. 265 326 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2134 Amo-Chr1 64220443 64223821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2134 - - gmx:100812388 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2134 01 64220443 64223821 Amo08g2462 08 38439387 38442888 PCT
Amo08g2462 08 38439387 38442888 Amo01g2134 01 64220443 64223821 PCT