Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2096 ATGAATACTGGAACCTATGGATATCCCAAACAAGGAGTGAAAAAGATTGATCCGTCCTATGATGTTCCAGAAGGAGTGGACAATCGGGGAAGATATGATGAGGAGTTTGCAAAAATCCTCACAAAGGATGCTCTGAAGTTTGTTGCTGAGTTGCAACGTGAGTTCAGGAGCCATATAAGGTATGCTCTGGAGTGCAGAAAAGAGGCAAAGAGGAGGTACAATGAAGGGGCTCTGCCGGGGTTCGATCCGGCGACGAGGTACATAAGGGAAGGGGAGTGGGTGTGTGCACCGGTTCCACCGGCTGTGGCTGATAGGAAGGTAGAGATCACAGGACCTGTGGAGAGGAAGATGGTTATCAATGCTCTCAACTCTGGAGCTAAAGTCTTTATGGTTAATGCACTCTCACCAGTGGGAGGAATCTATATGGGGGGTCAAGTAGAACTTGAAAGGATGGCAGTGGGCTGGGGACGTTTAACCTTTCAACGACAAAAGGCCGGACAAGCCCCGGTTCTGCCTGCTTTGATTTCGGTCCTTACTTCTACCCCAAAAAACAAAAATAAAAAAAAAATTCATTGGGCCCCACCCGTCATCCGCCAGCGATCTCAGGTGCCAGGCTTTTGGCCCTTTCTTCTACTTTCAAAAATGGATTTGCGCCGTTGGGATAACCCATTTTTCAGTTATGTATTTCCACAAGAAACCTTCCAAGGCTCCACCCGGGGATTCGCTGCTTTTCCCCGAACAGTTTATATTCTTTACCAGGCAGCTCAAATTCCAATTAGAGATGATCCAGCTGCTAATGAGGCAGCACTGGAACTGGTAAGGAAGGACAAACTAAGAGAKGTAAAGGCAGGGCACGACGGAACATGGGCAGCACACCCCGGTCTGATACCAGCCTGCGTGGAGGTTTTTAACAACAACATGGGCAATGCTCCTAATCAGATCAAGGACGCGAAGCGCGATGATGCTGCAAGCATAACTGAAGAAGACCTCTTGCAAATACCTAGAGGTGTACGTACAATGGATGGTCTCCGCTTGAATACACGTGTCGGTATTCAGTATGTGGCGGCATGGCTCACTGGATCTGGTTCAGTTCCTCTTTACAACCTCATGGAAGATGCTGCCACTGCTGAGATTAGCAGGGTGCAGAACTGGCAGTGGATCAAGTATGGAGTGGAGTTGGATGGGGATGGACTCGGAGTAAGAGTGAGCAAGGAGCTCTTCAGCCGAGTGGTTGAGGAAGAGATGGCTAGGATTGAAAGTGAGGTGGGAAAAGATAAATTCAAGAAGGGAATGTATAAGGAGGCTTGCAAGATCTTCAAAAGGCAGTGCACTGCTCCAACACTGGATGATTTTCTGACCCTGGATGCCTACAATTACATAGTCATACAACACCCCAAGGGACCAGCAAAGCTTTGA 1416 0.4823 MNTGTYGYPKQGVKKIDPSYDVPEGVDNRGRYDEEFAKILTKDALKFVAELQREFRSHIRYALECRKEAKRRYNEGALPGFDPATRYIREGEWVCAPVPPAVADRKVEITGPVERKMVINALNSGAKVFMVNALSPVGGIYMGGQVELERMAVGWGRLTFQRQKAGQAPVLPALISVLTSTPKNKNKKKIHWAPPVIRQRSQVPGFWPFLLLSKMDLRRWDNPFFSYVFPQETFQGSTRGFAAFPRTVYILYQAAQIPIRDDPAANEAALELVRKDKLRXVKAGHDGTWAAHPGLIPACVEVFNNNMGNAPNQIKDAKRDDAASITEEDLLQIPRGVRTMDGLRLNTRVGIQYVAAWLTGSGSVPLYNLMEDAATAEISRVQNWQWIKYGVELDGDGLGVRVSKELFSRVVEEEMARIESEVGKDKFKKGMYKEACKIFKRQCTAPTLDDFLTLDAYNYIVIQHPKGPAKL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2096 471 PANTHER MALATE SYNTHASE 19 164 - -
Amo01g2096 471 Pfam Malate synthase 30 150 IPR001465 GO:0004474|GO:0006097
Amo01g2096 471 Pfam Malate synthase 254 461 IPR001465 GO:0004474|GO:0006097
Amo01g2096 471 SUPERFAMILY Malate synthase G 254 462 IPR011076 GO:0003824
Amo01g2096 471 Gene3D Malate synthase, domain 3 251 336 IPR046363 -
Amo01g2096 471 Gene3D Malate synthase, domain 3 23 177 IPR046363 -
Amo01g2096 471 PANTHER MALATE SYNTHASE 19 164 IPR006252 GO:0004474|GO:0006097
Amo01g2096 471 Gene3D Malate synthase, domain III 337 461 IPR044856 -
Amo01g2096 471 PANTHER MALATE SYNTHASE 253 471 IPR006252 GO:0004474|GO:0006097
Amo01g2096 471 SUPERFAMILY Malate synthase G 23 149 IPR011076 GO:0003824
Amo01g2096 471 PANTHER MALATE SYNTHASE 253 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2096 Amo-Chr1 61893248 61896276 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2096 K01638 - qsu:112013364 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2096 01 61893248 61896276 Amo11g1644 11 70951631 70955107 hybridization