Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0197 ATGGAATCTCATTCGTTGGTGTCGAAAGCGAGAACCGCGTTTCACTCTGCGGCTGCAAAAGCGGAGCGTGTTATCATGGATTTCAAATCCGATCGAGATTCTGCTGATAAACAATCGGGGAACGATTTGAGGAGGCTGCAGCAGCAGCAGCAGGAGGGACAAGAATCTGTTCATAACGAGAACGATTCCAAGCTTCGCAGCGAATTGAAGAATATAAAGTGGAGACCTCCACATATAGGGATAAAGCAGGATTGGCAAGATAAAATTAACAACCTTCGAAAGGCGAGGAAAGAAGTCGAAGATACAGACAAAGTAGGAGATACAAACATGGCTTGTGTTCCATTTTATGATGAAAATCTGTACATCCTAAATATGAAACAATATCAGGAAGCCAAGGCTTCTGAAGCAATTCCAACAGTTGAAGGCTTAACTGTTACAGCAAAGGAACCCATTCCTCCATCATCTGTCCTGAAGCAATTGGCTATAGCAGTTGAGGCCGGAAGGAAAACGAACTCAATGAAAGATTTTCTAGCTTCATCAACAAGTTCTTCACCTGGCAGAGAGAAGGCAGGCTTAAGTTTCTCTGCTGTTAAGGCTTTAGTGATGCGTGAAAAGGAAGACAAACTTACCTCTGAGTTTAGCAGCGATGAGAAAGTTGTGCATTTGATTAAGTCTCTGTTTGATCCAGAGGGAGGGCTCCTTAGCAGGAAAATCAACATGAATCCCGAGGAAACTGCTATAACATCTTTACTAAGAGATATTCATGGTGCTCCTCCTGAAAGCCTAGTTGTTAAGTTGGCAGAAGTTATTGGAAACTTTAAGACCCTCCGAAAAATGGCTCTTTTTTGGTGCAGAGTTGTTGCTGAACTGAAGAAACATTGGTCTGAAGAAAAATATTTACCCGGAGTTCCTCTAGATGACATTCCAGATTTAAACTCATGTCTTCTATATCAGCAATTTCAAGTAATCAATTGTTGCATCTCTCGGAAAATGCGCCATATTATTGCCACCGAATCCCTGGAGTCTATGATGAAAGAGGCCAATTCAAATATTGGAAGATCTGACAAATATACCGACAGAGCTCCCACAAAGCCTTTATTATATGCTAAATTAAGTACTGGGGAGCTTGTTCTTCGACTTGGTGCTCATTGCCCATCTGGAGATCTGACAATGCTAGAAACTGGCGAGCCTGTGTACTCTCCTATCACCCAGGAAGGACCCTTGCTTACAGAAGATCTGATCAAAGAAACTGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGTGCTGGTTGCTCTCAACTTCTCTCTGATATGCAAGCTTTCAAGGCTGCAAATCCTGGTTGTATTCTGGAAGATTTTGTAAGATGGCACTCTCCACCTGATTGGACAGAAAGTGAGGCAAGTGTCGAGGATAGTGATTTTTTTGAGGGCTGCGAGTCGTTGTCTTCTAGAGGACAGCTAAGTCGGCGAATGCAGAAAGAAGGAAATTTGTGGCGTGAATTGTGGGAAACATCTAAGCCAGTACCAGCCATTAAACAGGCACCTCTCTTTGATGAGGATTTGGCAGTGGAGGGCATACTCGATATATATGAGGACATGCCGCCTTTTGAGCTTTTTGGACAACTGTTTGTTTCATTATTTGGTTTAGGGCTTGCAATAGCAGAAACTATGCTGACTGATAACAGTGACTTTTCAAAGATGTTCAATGACTGCAAGGATTATGTGGTTAGCACTTGTCAAAGCAACAGATGGAGTGAGAAACTTGATGAACTTGTTCAGGTCTATGAAACAGTGGAGATGATGTTAGTGAATCCAGAGGAAGCACTAAAGATGACAAAACAGACAGATGATTCAGTTCTGAGCACTGGTGAACTTAAGAGCCGGTTTAAGAAGCTTAGCCATATCTTTGGTGGGAAAGATAAACCAAAAGATCAGGTAAACACTGATGAAAAGCCGATTCGACAAGCTTTTTCGAATTTCTTCGACAGCAAGTCATCTTTATTTTCAAAGAAGCCCCCAAAACCAGCAAGCCTATCACCTTCCCAGAAATCTTCCTCTCTGGAAAGTGATTGGACATTGGTTTAG 2085 0.4254 MESHSLVSKARTAFHSAAAKAERVIMDFKSDRDSADKQSGNDLRRLQQQQQEGQESVHNENDSKLRSELKNIKWRPPHIGIKQDWQDKINNLRKARKEVEDTDKVGDTNMACVPFYDENLYILNMKQYQEAKASEAIPTVEGLTVTAKEPIPPSSVLKQLAIAVEAGRKTNSMKDFLASSTSSSPGREKAGLSFSAVKALVMREKEDKLTSEFSSDEKVVHLIKSLFDPEGGLLSRKINMNPEETAITSLLRDIHGAPPESLVVKLAEVIGNFKTLRKMALFWCRVVAELKKHWSEEKYLPGVPLDDIPDLNSCLLYQQFQVINCCISRKMRHIIATESLESMMKEANSNIGRSDKYTDRAPTKPLLYAKLSTGELVLRLGAHCPSGDLTMLETGEPVYSPITQEGPLLTEDLIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTESEASVEDSDFFEGCESLSSRGQLSRRMQKEGNLWRELWETSKPVPAIKQAPLFDEDLAVEGILDIYEDMPPFELFGQLFVSLFGLGLAIAETMLTDNSDFSKMFNDCKDYVVSTCQSNRWSEKLDELVQVYETVEMMLVNPEEALKMTKQTDDSVLSTGELKSRFKKLSHIFGGKDKPKDQVNTDEKPIRQAFSNFFDSKSSLFSKKPPKPASLSPSQKSSSLESDWTLV* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0197 694 MobiDBLite consensus disorder prediction 664 694 - -
Amo01g0197 694 Pfam Rab3 GTPase-activating protein catalytic subunit 379 530 IPR026147 -
Amo01g0197 694 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 3 693 - -
Amo01g0197 694 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 3 693 IPR045700 GO:0005096|GO:0043547
Amo01g0197 694 MobiDBLite consensus disorder prediction 29 70 - -
Amo01g0197 694 Coils Coil 82 102 - -
Amo01g0197 694 MobiDBLite consensus disorder prediction 41 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0197 Amo-Chr1 3314824 3322807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0197 K18270 - gmx:100818643 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0520 11 9045420 9053779 Amo01g0197 01 3314824 3322807 hybridization