Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0168 ATGGGTTGCAGGAACAGGGCGGAGTCGTTCGAAGAGGATCATAGCGGAGCATCGTCACTGAGCGAGGCGTTACTGTTAACGACGATGTGCATCATAGGCCTCCCCGTCGATGTCCACGTTAAGGATGGCTCCGTCTATTCTGGAATCTTCCACACTGCCTCTGTCGATTCCGATTACGGTATCGTTTTGAAGAAGGCAAGGATGACCAAGAAGGGAAAGGGAAAGACCAATGTGGGAAAGGAGGATTTGGTAGATACACTGGTAGTTCTATCTCGTGATTTGGTGCAAGTTGTTGCTAAGGAAGTAATGCTTCCTACCAAGAGTTTTGGTGGAAATATAACTAGTGATGATGGCGAAACAGTTATGCACGATATGTGTTCTCGTGAGAGTCCAACATGTGAGGTAGAGAATCATATGAAGTCTTTGACGGATGTAAAGCATGTTAATCAATCAAGGACTCCAGTCCAAAATGAGAATGGATTTACCCATTGTCTTCCACCTTCAACTGCTGCCATTGATTTTGAAAGAAATAAGTTGCCTGTTAATCAGATGAGAACTTCCACAGAAGTTGATTGCGGGAAAACTGATAAAACAAATATTGGAGAGATTGAAGCATATTCTGGTTCCTCAATCAACTGTAGACAGGCTGGAGATGACAATTCAAAAAGGAATGCTGATGACTTCAGAGAGAAGCCTGAGTTTGTTCAAGGAAAACTTGATGAGAAGAATCAAGTCATCAAATCAACTCATGAAACTAATACTCATCTTGTCCAAGTAGAAGCTGTTGAGAATAGAAGCTATATGGCATCAAATGCTTCTGATAATGGGTTTTATAGAACTAACGGTAATGCATCTGTTAAAGCTGATGATCGGTGTAGTGAAAGGTCTACTACAGCAAATTCTGCTCCTATGAGTTCTGCCCAAGGCATAGATCTCATTTTAGAGTCACACAATATGCCAGAAAAATCTGTTGAGATATCTGCTCCAAAGGGTACAGATTCTACCAGAAATACTAAGGAATTTAAGCTCAACCCAGCGGCCAAAATTTTCTCTCCATCTTTTGTAAATCCTATTTCAACAACTGCTTCCATGCCTATTTCTGCAAACATGGTTTATGTACCAAATAGTTCTCCTGTGGTACATACTGCTGCTGTTCAACCTGAAACCGGTCTCAGTACTTTTGCTTCACTGCCTTCCATGCCTGTTAAGGTTGCACAGTATAGTAACTTGACAATAGGAAATGGTGGAAGTGGTTCTCAATTTTCACCTCCTATTGTTGGACAACTTGCTCATAACAGAGCACAACCTCTACGCTATGGTGCACATTACCCTCCCGTTTTGTCTGAACATGCTTATTTGCAACCCAGCTCCCCTGCTGTTATGGTTGGACGTTCCGGGCAGTTAGTCTATGTTCATTCAGTTTCCCATGATTTGGTTCATGGTGGAACAGCTATCTCCTCAATTTCAGCTCGTCCTATGTTGAATCATGTACAATATCCAAAGCAGCAAGGAGCCTCAGTTGGTCAGCCAATACCAATTTGTGTACCCCCGCCAATCCTAACGAATGCGCCGCAACCCTTTGCTCTTCAAAGCCACATTCCGCTTCTGCAACCTGGGTTTCCTGTAACTCGACCTGTTTCAGTACCCGGGCCAAATGGTTACTATGGAGCTAAATTTTCATGA 1683 0.429 MGCRNRAESFEEDHSGASSLSEALLLTTMCIIGLPVDVHVKDGSVYSGIFHTASVDSDYGIVLKKARMTKKGKGKTNVGKEDLVDTLVVLSRDLVQVVAKEVMLPTKSFGGNITSDDGETVMHDMCSRESPTCEVENHMKSLTDVKHVNQSRTPVQNENGFTHCLPPSTAAIDFERNKLPVNQMRTSTEVDCGKTDKTNIGEIEAYSGSSINCRQAGDDNSKRNADDFREKPEFVQGKLDEKNQVIKSTHETNTHLVQVEAVENRSYMASNASDNGFYRTNGNASVKADDRCSERSTTANSAPMSSAQGIDLILESHNMPEKSVEISAPKGTDSTRNTKEFKLNPAAKIFSPSFVNPISTTASMPISANMVYVPNSSPVVHTAAVQPETGLSTFASLPSMPVKVAQYSNLTIGNGGSGSQFSPPIVGQLAHNRAQPLRYGAHYPPVLSEHAYLQPSSPAVMVGRSGQLVYVHSVSHDLVHGGTAISSISARPMLNHVQYPKQQGASVGQPIPICVPPPILTNAPQPFALQSHIPLLQPGFPVTRPVSVPGPNGYYGAKFS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0168 560 PANTHER POLYADENYLATE-BINDING PROTEIN INTERACTING PROTEIN 1 556 - -
Amo01g0168 560 Pfam Ataxin 2 SM domain 22 100 IPR025852 -
Amo01g0168 560 PANTHER ATAXIN 2-RELATED 1 556 IPR045117 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0168 Amo-Chr1 3034758 3041761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0168 - - adu:107480281 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0564 11 9832355 9839406 Amo01g0168 01 3034758 3041761 hybridization