Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1538 ATGGAACATCACCGATCTTATGGTGTCTCTTCTTCTTCTTCTTCCTCACACCATCTTCAAACAGGGCCACAGTCTGTGTCTTCACAACGTAGCTTAGGTTCAATCCCTTCACTGAACTCACAATCTCATCACCACCATGAAATCCACCCTTCCACCACCACCTACCACCGGTGCCTCACAACTCTCAAAGGCCACACTTCTTCTTCTTCTTCTTACACATCCTGTCTTGCTCTATCTGGGAAATTCCTCTACACAGGTTCATCTGACAGAGAAATCAGATCATGGAATCGCTCTGTTTTGTTCTCTGATGACTCGTCTGACCCTGAAAATTGCATCACCAACATAGCACTTTCAGGAAAGGGTGCAGTGAAATCCATAGTGGCTCAATCTGATAAGCTCTTCAGTGCTCACCAAGATCACAAAATCAGAGTATGGAAGATTATTAGCAACAACGAAACAGACCAACAAGAGTACACACATGTAGCCACACTTCCAACGTTGGCTGATCGAGCTTCCAAGATTCTGATCCCCAAGAACCATGTCCAGATCAGAAGGCACAAGAAATGCACGTGGGTTCATCATGTGGACACAGTCTCTGCTCTAGCACTGTCCAAAGACGAGACCTTGCTCTACTCAGTTTCATGGGACAGGACAGTGAAAATATGGAGAACCAGGGATTTCAGCTGTTTAGAATCAGTAACCAACGCACACGATGACGCCATAAATGCGGTCGCAGTTTCCAACGATGGGTACGTATACACAGGATCAGCAGACAGGAAAATCAAAGTGTGGAAGAAAGGAGTAGGAGAAAAGAAGCATACTTTGGTAGATACATTAGAGAAACACGATTCTGGGGTCAATGCTTTGGCTCTGAGCAATGATGGGCGTGTGTTATATTCTGGCGCGAGTGACAGATCGATACTGGTTTGGGAGAGAGATGATGAAGAAGAAGATGGGAAAATGGGGTTGGTGGGGGCATTAAGAGGGCATAGCATGTCTATATTGTGTTTGGCTGTGGCTTTGGATTTGGTGTGTAGTGGTTCTGCTGATAGAACCATTCGGATTTGGAGAGGGAATGAGAGAGAGTACTCATGTTTAGCAGTTTTGGAAGGTCATAGAGGAGCGATTAAGTGTATAACTGCGGCCATTGATCGTTGTGATTCGTCGGAAGCTTCTTTTCTAGTGTATAGTGGCAGTTTGGACTGCGACATTAAGATGTGGAAGGTTGTGGTTCCTGTTTCTTAG 1245 0.453 MEHHRSYGVSSSSSSSHHLQTGPQSVSSQRSLGSIPSLNSQSHHHHEIHPSTTTYHRCLTTLKGHTSSSSSYTSCLALSGKFLYTGSSDREIRSWNRSVLFSDDSSDPENCITNIALSGKGAVKSIVAQSDKLFSAHQDHKIRVWKIISNNETDQQEYTHVATLPTLADRASKILIPKNHVQIRRHKKCTWVHHVDTVSALALSKDETLLYSVSWDRTVKIWRTRDFSCLESVTNAHDDAINAVAVSNDGYVYTGSADRKIKVWKKGVGEKKHTLVDTLEKHDSGVNALALSNDGRVLYSGASDRSILVWERDDEEEDGKMGLVGALRGHSMSILCLAVALDLVCSGSADRTIRIWRGNEREYSCLAVLEGHRGAIKCITAAIDRCDSSEASFLVYSGSLDCDIKMWKVVVPVS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1538 414 Gene3D - 47 179 IPR015943 GO:0005515
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 222 - -
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 265 - -
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 311 - -
Alju13g1538 414 CDD WD40 58 408 - -
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 356 - -
Alju13g1538 414 MobiDBLite consensus disorder prediction 7 41 - -
Alju13g1538 414 MobiDBLite consensus disorder prediction 1 51 - -
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 311 IPR001680 GO:0005515
Alju13g1538 414 Gene3D - 180 411 IPR015943 GO:0005515
Alju13g1538 414 SMART WD40_4 55 96 IPR001680 GO:0005515
Alju13g1538 414 SMART WD40_4 272 311 IPR001680 GO:0005515
Alju13g1538 414 SMART WD40_4 362 408 IPR001680 GO:0005515
Alju13g1538 414 SMART WD40_4 320 357 IPR001680 GO:0005515
Alju13g1538 414 SMART WD40_4 184 223 IPR001680 GO:0005515
Alju13g1538 414 SMART WD40_4 108 146 IPR001680 GO:0005515
Alju13g1538 414 SMART WD40_4 226 265 IPR001680 GO:0005515
Alju13g1538 414 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 410 IPR045182 -
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 356 IPR001680 GO:0005515
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 265 IPR001680 GO:0005515
Alju13g1538 414 Pfam WD domain, G-beta repeat 364 408 IPR001680 GO:0005515
Alju13g1538 414 Pfam WD domain, G-beta repeat 276 310 IPR001680 GO:0005515
Alju13g1538 414 Pfam WD domain, G-beta repeat 229 265 IPR001680 GO:0005515
Alju13g1538 414 Pfam WD domain, G-beta repeat 324 356 IPR001680 GO:0005515
Alju13g1538 414 Pfam WD domain, G-beta repeat 57 96 IPR001680 GO:0005515
Alju13g1538 414 Pfam WD domain, G-beta repeat 192 222 IPR001680 GO:0005515
Alju13g1538 414 SUPERFAMILY WD40 repeat-like 56 409 IPR036322 GO:0005515
Alju13g1538 414 FunFam BnaA09g28200D protein 181 269 - -
Alju13g1538 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1538 Alju-ChrAlju13 33654611 33655855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1538 236 408 Acyl Lipid Metabolism Gene Families AT3G18860 31.111 2.96e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2605 06 53059113 53060327 Alju13g1538 13 33654611 33655855 CCT
Alju06g2605 06 53059113 53060327 Alju13g1538 13 33654611 33655855 ECH
Alju13g1538 13 33654611 33655855 Alju13g1538 13 33654611 33655855 ECH