Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2605 ATGGAGCTCCAGCGATCGTCTTCTTCATCCAACCACGTTCAATCTAGCAGACTAGCTTCTCTGTCTTCACAACGCAGCCTTGTTTCAGTTCCTTCCCTGAACTCTCAGTTTCAGCACCATGCATCATCAGCCTATTACCAGTGTCTTGCAACTCTCAAAGGTCACACTTCTTACGTATCATGTATAGCCCTCGCCGGAAAATTCCTCTACACTGGATCATCTGACAGAGAAATCAGATCCTGGAACCATAATGCTTCTTTCCATTCTGATATATTTGACCAGCCAAATTCTTCAATCAGTACTAGCATAATGGTGTCGGCAGGGAAAGGTGCAGTGAAGTCACTAATAGTTCAGTCTGATAAACTATTCAGTGCCCACCAAGACTACAAAATTCGAGTGTGGAAGGTTACAGCCGACGAGCCAGATCACCGGAAGTACACCCGTTTAGCCACACTTCCGACGTTAGGCGACCGAGCCACGAAGGTGTTGAACCCAAAGAACCATGTTCAGATTAGGAGGCATAAAAAAAGTACATGGGTTCACCATGTGGACACAGTCTCTGCTTTGGCCCTGTCAAGGGACGAGACCTTGCTCTACTCTGTTTCATGGGATCGAACAGTTAAAGTGTGGAGAATCAAAGACTTGACTTGTTTAGAATCAGTGAACAACGCACATGATGATGCTATAAACGCCATAGCAGTTTCTGGTGATGGTTATGTGTACACTGGATCAGCAGATAAGAAGATCAAAGTGTGGAAGAAATGTGAAGGAGAGAAGAAACATAGTTTGGTTGATACGTTAGAGAAGCACAACTCTGGGATTAATGCTTTGGCTCTGAGCAGTGATGGGTCTCTGTTATATTCAGGTGCTTGCGACAGATCTATACTGGTTTGGGAAAACGATAATAATGAAGAAGATGGGAAAATGAGGCTGGTGGGTGCGCTTAGGGGACACACTAAGTCTATATTATGTTTAGCTATGGTATCTGATTTGGTGTTTAGTGGTTCTGCTGATAAAACGATAAGAATATGGAGAGGCGTTCATGGTGATTATTCTTGTTTAGCAGTTTTAGAAGGTCATAATGGTCCTGTTAAGTGCTTAACTGCAGCAGTTGATCGTTATAATGGTGCTTCTGAAGAATCGTTTCTAGTTTACAGTGGCGGTTTGGACTGTGACATTAAGGTTTGGCAGATCATTGTACCTCTTGTTCTCTAG 1215 0.4346 MELQRSSSSSNHVQSSRLASLSSQRSLVSVPSLNSQFQHHASSAYYQCLATLKGHTSYVSCIALAGKFLYTGSSDREIRSWNHNASFHSDIFDQPNSSISTSIMVSAGKGAVKSLIVQSDKLFSAHQDYKIRVWKVTADEPDHRKYTRLATLPTLGDRATKVLNPKNHVQIRRHKKSTWVHHVDTVSALALSRDETLLYSVSWDRTVKVWRIKDLTCLESVNNAHDDAINAIAVSGDGYVYTGSADKKIKVWKKCEGEKKHSLVDTLEKHNSGINALALSSDGSLLYSGACDRSILVWENDNNEEDGKMRLVGALRGHTKSILCLAMVSDLVFSGSADKTIRIWRGVHGDYSCLAVLEGHNGPVKCLTAAVDRYNGASEESFLVYSGGLDCDIKVWQIIVPLVL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 222 253 IPR001680 GO:0005515
Alju06g2605 404 FunFam BnaA09g28200D protein 169 257 - -
Alju06g2605 404 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 398 IPR045182 -
Alju06g2605 404 Gene3D - 4 160 IPR015943 GO:0005515
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 222 253 - -
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 179 213 - -
Alju06g2605 404 CDD WD40 48 397 - -
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 220 IPR001680 GO:0005515
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 344 - -
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Alju06g2605 404 Gene3D - 161 257 IPR015943 GO:0005515
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 52 82 - -
Alju06g2605 404 SUPERFAMILY WD40 repeat-like 46 397 IPR036322 GO:0005515
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 52 82 IPR001680 GO:0005515
Alju06g2605 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 344 IPR001680 GO:0005515
Alju06g2605 404 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Alju06g2605 404 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Alju06g2605 404 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Alju06g2605 404 Pfam WD domain, G-beta repeat 47 82 IPR001680 GO:0005515
Alju06g2605 404 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Alju06g2605 404 Pfam WD domain, G-beta repeat 311 344 IPR001680 GO:0005515
Alju06g2605 404 Pfam WD domain, G-beta repeat 352 396 IPR001680 GO:0005515
Alju06g2605 404 Pfam WD domain, G-beta repeat 223 253 IPR001680 GO:0005515
Alju06g2605 404 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Alju06g2605 404 Gene3D - 258 401 IPR015943 GO:0005515
Alju06g2605 404 SMART WD40_4 308 345 IPR001680 GO:0005515
Alju06g2605 404 SMART WD40_4 98 135 IPR001680 GO:0005515
Alju06g2605 404 SMART WD40_4 172 211 IPR001680 GO:0005515
Alju06g2605 404 SMART WD40_4 350 397 IPR001680 GO:0005515
Alju06g2605 404 SMART WD40_4 260 299 IPR001680 GO:0005515
Alju06g2605 404 SMART WD40_4 214 253 IPR001680 GO:0005515
Alju06g2605 404 SMART WD40_4 45 82 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2605 Alju-ChrAlju06 53059113 53060327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2605 224 397 Acyl Lipid Metabolism Gene Families AT3G18860 26.519 2.00e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2605 06 53059113 53060327 Alju13g1538 13 33654611 33655855 CCT
Alju06g2605 06 53059113 53060327 Alju13g1538 13 33654611 33655855 ECH
Alju06g2605 06 53059113 53060327 Alju06g2605 06 53059113 53060327 ECH