Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0417 ATGTACAGAGATCGAGGAGCAGTTGGATCGAAATCGGAAGTTGGTTCCGTTGATCGGAAGCGAATTAATGACGTCCTGGACAAGCAGCTTGAGCGATCCTCGCCGTCGACGTCTAGGACCATCAACGGCAAGGATAGGTCGGCAACATCCGCACTGACCGGCAAGCCACCCCCAGATCATCGGGACCCACGTTCTGCTCCCGGCTCCAAAAACATCAACGCTTCGGATGAGGAATCTGAAACAGACAGTGAAGAGTCAGATGTTAGTGGTTCTGACGGAGATGACACATCTTGGATTTCATGGTTTTGCAATCTGAGAGGAAATGAATTCTTTTGTGAGGTTGATGATGATTACATCCAGGATGACTTCAACCTCTGCGGATTAAGCAGTCAAGTACCTTACTATGATTATGCGCTTGATTTAATTCTGGATGTTGAATCCTCCCACGGTGACATGTTCACAGAGGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTATATGGTCTAATTCATGCCCGATACATCTTGACAAGCAAAGGAATGGCTGCAATGCTGGACAAGTACAAGAACTACGATTATGGTAGATGCCCAAGAGTTTACTGCTCTGGACAACCCTGCCTTCCAGTTGGTCAGGCAGACGTTCCCCGGTCAAGTACTGTGAAAATATATTGCCCTCGGTGTGAAGATATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGGACTACGTTTCCTCATCTGTTCCTGATGACGTACGGACAACTGAAGCCACAAAAACCATTACAGAGCTATGTTCCAAGAGTTTTTGGTTTCAAACTTCACAAGCCATGA 855 0.4585 MYRDRGAVGSKSEVGSVDRKRINDVLDKQLERSSPSTSRTINGKDRSATSALTGKPPPDHRDPRSAPGSKNINASDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDYGRCPRVYCSGQPCLPVGQADVPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPLQSYVPRVFGFKLHKP 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0417 284 SMART CK_II_beta_2 97 280 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 Pfam Casein kinase II regulatory subunit 97 280 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 MobiDBLite consensus disorder prediction 1 93 - -
Alju12g0417 284 ProSitePatterns Casein kinase II regulatory subunit signature. 198 229 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 MobiDBLite consensus disorder prediction 14 28 - -
Alju12g0417 284 SUPERFAMILY Casein kinase II beta subunit 95 283 IPR035991 GO:0005956|GO:0019887
Alju12g0417 284 FunFam Casein kinase II subunit beta 195 269 - -
Alju12g0417 284 PRINTS Casein kinase II regulatory subunit family signature 216 237 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 PRINTS Casein kinase II regulatory subunit family signature 114 128 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 PRINTS Casein kinase II regulatory subunit family signature 169 190 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 PRINTS Casein kinase II regulatory subunit family signature 97 113 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 PRINTS Casein kinase II regulatory subunit family signature 194 215 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 PRINTS Casein kinase II regulatory subunit family signature 244 261 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 PANTHER CASEIN KINASE II SUBUNIT BETA 76 283 IPR000704 GO:0005956|GO:0019887
Alju12g0417 284 MobiDBLite consensus disorder prediction 29 49 - -
Alju12g0417 284 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 90 194 IPR016149 GO:0005956|GO:0019887
Alju12g0417 284 Gene3D - 195 269 - -
Alju12g0417 284 FunFam Casein kinase II subunit beta 90 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0417 Alju-ChrAlju12 5063666 5066374 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1889 09 42683398 42685796 Alju12g0417 12 5063666 5066374 CCT
Alju12g0417 12 5063666 5066374 Alju12g0417 12 5063666 5066374 ECH