Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0411 ATGGCAGTTCAGGCTCAATATCCTTCTCATATTCTCCTTCTTCACCACAACACCAGCAACCTTCAAGCAGATTATGAATCTTCGTTACCACCTCCACAAGCTCTTCATCAATCTCCAGATATTACTAAACCTCCACCACCTGTTGTGAATTCTGTTTCTCTGCAATCTCCTCAATTGCTCAACCACCACCATCACAATAGCGTCTACACCGGCCTCCGCTTATCCTCCTCCGTCCACCACCAACAACCACCTCACTTACCTCACCACAGCCACCAACAACAACAAACATCTCAACATGTATCAGTGTTTTCTTCTCAAGATTATCTTGTCTCCCAAATCAAGAGACAACAAGACGAAATTAACCAATTCCTTCAAGCACAGGAAGCGGAATTGCATAGAACATTAGCGGAGAAAAGGCAGAGACATTACCGAGAGCTTCTCACCGCGGTGGAAGAAGCCGTGGCGCGGCGGCTGAGGGAGAAAGACCTGGAGTTGGAGAAAGTCACGCACACGAACGCCGAGTTAGAGGCACGCGTCGCTCAACTCAGCTCCGAAGCACAGCTTTGGCAGGCAAAGGCAAAAGCATACGAAGCAACCGCAGCTTCCTTGCAAGCCCAACTGCAACAGGCCATGATGAACGGTACGGCCCTAGAAAAGAGAGACGATGATGCGCTATCGTGCGCCGCCGGTGCCGACGACGCCGAGTCGGCTTACGTTGACCCGGACCGAGTCCAACCGACCGGACCGAAATGCAGAGGGTGTGGCCGGCGGGTAGCTTCGGTGGTGGTATTGCCGTGTCGGCATCTGTGCTTGTGCCCCAAATGTGACGTCCATTTCCGAGCATGTCCGGTTTGCCTTTCCTTCAAAGATTCAACCGTTGAGGTTTTTCTATCTTAG 897 0.5151 MAVQAQYPSHILLLHHNTSNLQADYESSLPPPQALHQSPDITKPPPPVVNSVSLQSPQLLNHHHHNSVYTGLRLSSSVHHQQPPHLPHHSHQQQQTSQHVSVFSSQDYLVSQIKRQQDEINQFLQAQEAELHRTLAEKRQRHYRELLTAVEEAVARRLREKDLELEKVTHTNAELEARVAQLSSEAQLWQAKAKAYEATAASLQAQLQQAMMNGTALEKRDDDALSCAAGADDAESAYVDPDRVQPTGPKCRGCGRRVASVVVLPCRHLCLCPKCDVHFRACPVCLSFKDSTVEVFLS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0411 298 Pfam Zinc finger, C3HC4 type (RING finger) 250 286 - -
Alju12g0411 298 Coils Coil 121 141 - -
Alju12g0411 298 Coils Coil 158 220 - -
Alju12g0411 298 PIRSF SBP1_RNase_bind 1 298 IPR017066 -
Alju12g0411 298 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 68 295 IPR017066 -
Alju12g0411 298 MobiDBLite consensus disorder prediction 75 101 - -
Alju12g0411 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 298 IPR013083 -
Alju12g0411 298 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 233 297 - -
Alju12g0411 298 ProSiteProfiles Zinc finger RING-type profile. 251 285 IPR001841 -
Alju12g0411 298 MobiDBLite consensus disorder prediction 23 48 - -
Alju12g0411 298 CDD mRING-HC-C3HC5_CGRF1-like 249 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0411 Alju-ChrAlju12 4992828 4994061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0411 251 285 Miscellaneous Gene Families AT2G21380 40.000 8.85e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1896 09 42767047 42768407 Alju12g0411 12 4992828 4994061 CCT
Alju12g0411 12 4992828 4994061 Alju12g0411 12 4992828 4994061 ECH