Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1896 ATGGCCGTTCAAGCTCAATACCCATCCAATATTCTCTTCCTCAACAGAAATGAACAGGAAGGACATGATTATTCGTTACAGCCACAACCAGGAGGGCTTCTTGATCAGTCCCATATCTTATTCAACAATGGAGGTACTAATAATTATCGCAAGAGAGGAAGAGAAGCAACGACGGCCACCTGCGTCGGTCAAACAGCTCATAACGGTGTTAATCCCTTCTCTTTGCAATCCCAGGCACCTCAGCTCGTAGAACTCTCTCAACTCCATAACCAACAACCAAATGTGGTCTCCACAGGCCTCCGATTATCATTCGACGACCATCAACAGCAGCAGCAACAGAGACTACAATTACAGCAACAACGCCAACAACAACAACAACAACAACAACAAGCCTATCAGCCCTATGCTTTCTTATCTTTATTGCCCGAAGGATATGCCTCCCAAATCAAACAACAGCGTGATGAGATTGATCAATTTCTCCAAGCCCAGGGAGAACAATTGCGACGGGCATTAGCCGAGAAGAGACAGAGGCATTATCGTGCACTTCTAAGCGCGGCGGAAGAATCGGTGGCGCGGCGATTGAGAGAGAAGGAGGTAGAGATGGAAAAAGCAACGCGCAGGAATGCCGAGTTAGAAGCGCGCGCGGCGCAACTTAGCTTGGAGGCGCAGGTTTGGCAGGCGAAGGCGAAGGCACAGGAGGCAACGGCGGCGTCTCTGCAAGCGCAACTGCAACAGGCTATGATGAGCGTCGGTGCTCAGGATAAAGCAGGGTGTTTAGCGGAGGACGGAGGGATATCTTGCGCGGTGGGTGGCGGTGAGGGCCAACCGGAGGACGCTGAGTCAGCGTATATTGACCCGGACCGAGTTGTGGAATCGGGACCCAAATGCAGAGGGTGTGGGAAGCGAGTGGCATCGGTGGTGGCATTGCCGTGTCGGCACCTATGCATCTGCACGGAATGCGACGCGCACTTCCGAGCGTGTCCTGTATGCTTCACACTCATAAATTCAACCGTTGAAGTCTTCCTCTCTTAG 1032 0.5194 MAVQAQYPSNILFLNRNEQEGHDYSLQPQPGGLLDQSHILFNNGGTNNYRKRGREATTATCVGQTAHNGVNPFSLQSQAPQLVELSQLHNQQPNVVSTGLRLSFDDHQQQQQQRLQLQQQRQQQQQQQQQAYQPYAFLSLLPEGYASQIKQQRDEIDQFLQAQGEQLRRALAEKRQRHYRALLSAAEESVARRLREKEVEMEKATRRNAELEARAAQLSLEAQVWQAKAKAQEATAASLQAQLQQAMMSVGAQDKAGCLAEDGGISCAVGGGEGQPEDAESAYIDPDRVVESGPKCRGCGKRVASVVALPCRHLCICTECDAHFRACPVCFTLINSTVEVFLS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1896 343 PIRSF SBP1_RNase_bind 1 343 IPR017066 -
Alju09g1896 343 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 278 342 - -
Alju09g1896 343 ProSiteProfiles Zinc finger RING-type profile. 296 330 IPR001841 -
Alju09g1896 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 343 IPR013083 -
Alju09g1896 343 FunFam Baculoviral IAP repeat containing 7 305 341 - -
Alju09g1896 343 Coils Coil 107 130 - -
Alju09g1896 343 Pfam Zinc finger, C3HC4 type (RING finger) 295 335 - -
Alju09g1896 343 Coils Coil 187 249 - -
Alju09g1896 343 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 45 340 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1896 Alju-ChrAlju09 42767047 42768407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1896 296 343 Miscellaneous Gene Families AT2G21380 35.417 3.48e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1896 09 42767047 42768407 Alju12g0411 12 4992828 4994061 CCT
Alju09g1896 09 42767047 42768407 Alju09g1896 09 42767047 42768407 ECH