LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju12g0035	ATGTCTGGAACATTTTCACCCAAGTCAGCTCTTGAAAGATCTGATGGTGCTGGGTCTTTTAAGAAGAGAGCCTCAAATAAGTTCAGGAGTTCTTTGTCAAGAAAGGGTAGGAGATCCAGCAAGGTCATGTCTGTTGAAATTGAGGATATTCGTGATGCTGAGGAGTCTGCAGTTGTTGAGAAGTTCCGTGAAGTTCTTGTATCAGAGGACCTTCTTCCTGCTAAGCATGATGATTATCATACGATGCTAAGATTCCTTAAGGCCAGGAAATTTGATATTGAGAAAACAAAGCAAATGTGGTCTGACATGCTCAAGTGGAGAAAGGAATTTGGTACTGACACAATTATGGAGGATTTTGAATTCAAGGAACAAAGTGAAGTTTTAAAATATTATCCCCAAGGGCATCATGGAGTGGATAAAGATGGACGACCCGTGTACTTCGAGAGATTAGGTCTAGTAGACTCAAACAAGCTGATGCAAGTGACAACCTTAGAACGCTATATCAAGTACCATGTAAGGGAGTTTGAGAGGACATTTGACATAAAGTTGCCAGCATGTTCAATTGCTGCAAAGAAGCACATTGATCAAAGTACAACCATCCTGGATGTGCAAGGAGTGGGGCTCAAGAACTTTAGCAAATCTGCTAGAGACCTTGTTACTGCCCTTCAGAAGATTGACGGTGACAATTATCCAGAGAGCTTGAATCGTATGTTCATCATCAATGCTGGTTCCGGATTCAGAATGTTATGGAGCACTGTAAAATCCTTCCTTGATCCTAAAACCACGGCAAAAATTAATGTTCTTGGCAACAAGTACCAGAGCAAATTGCTTGAAATAATTGATGCAAGTGAATTGCCAGACTTTTTTGGAGGCACTTGCAACTGTGCTGATCAAGGAGGTTGTATGCTTTCTGATAAGGGCCCATGGAAGAATGAAGAAATATTAAAGAAGGTTCTAAATGGCGACCATAAAAGTTCAAGCAAAAGTGAGTCACCTGTGGTGGAAGAAGATAAGACAGTGTCCGAGGTAGTTCCAGTGTCTGAGGCAACACCAGTTTCTGAGGAGGTGCCAGTGTCTGAAGGAGTAGTGCCTACCAGTAACCACATCAGTCACACAGAAGAAACTCCAGTGCATAATGAGGTCCCTGCTATTGAAGCTTGCAAATCCGAGGACTTAGTCCCAGAGTCTGATGAAATGGTCCCAGCGTCTGATAAAATGGCTATGAAAAAAGTTGAAGACAGCGAGAGATTAGCCTTATCAAAAGCTGGAATAGATACATTCATCAATATGGCTGATGCTTACAAGCTCCATGAGAAGTTCAACTACCAGCTTTTCACTGGGGTCATGGCCTTTGTTATGGGAATCCTGACAATGGTCAAAATGACACGAAACATGCCCAAGAACATCACCGATGGCAACTTCTCCAACCCTACTATTTTCTCTGCTGAGCCCACTTATACAGGGCAGGCCCCTGCTAATAACAACGACCCCATGCCCACCATCTCTGCTGAAGAATTTATGGCTGTTCTTAAACGAATGGCTGAGTTGGAAGAGAAAATGGTCACCATGAATATACCTGCTTACATGCCGCCCGAAAAGGAGGAAATGCTCGTTGCTGCTATGAACAGGGCCGATGTATTGGAAAAAGAACTCATGGCTACCAAGAAGTCCTTGGAGGATTCACTTGCCCAACAAGAGGAGCTTTTAGCTTATATTGACAAGAAGAAGAAGAAGAAATGGTTTGGATGA	1749	0.4282	MSGTFSPKSALERSDGAGSFKKRASNKFRSSLSRKGRRSSKVMSVEIEDIRDAEESAVVEKFREVLVSEDLLPAKHDDYHTMLRFLKARKFDIEKTKQMWSDMLKWRKEFGTDTIMEDFEFKEQSEVLKYYPQGHHGVDKDGRPVYFERLGLVDSNKLMQVTTLERYIKYHVREFERTFDIKLPACSIAAKKHIDQSTTILDVQGVGLKNFSKSARDLVTALQKIDGDNYPESLNRMFIINAGSGFRMLWSTVKSFLDPKTTAKINVLGNKYQSKLLEIIDASELPDFFGGTCNCADQGGCMLSDKGPWKNEEILKKVLNGDHKSSSKSESPVVEEDKTVSEVVPVSEATPVSEEVPVSEGVVPTSNHISHTEETPVHNEVPAIEACKSEDLVPESDEMVPASDKMAMKKVEDSERLALSKAGIDTFINMADAYKLHEKFNYQLFTGVMAFVMGILTMVKMTRNMPKNITDGNFSNPTIFSAEPTYTGQAPANNNDPMPTISAEEFMAVLKRMAELEEKMVTMNIPAYMPPEKEEMLVAAMNRADVLEKELMATKKSLEDSLAQQEELLAYIDKKKKKKWFG	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju12g0035	582	PRINTS	Cellular retinaldehyde-binding protein signature	283	292	-	-
	Alju12g0035	582	PRINTS	Cellular retinaldehyde-binding protein signature	81	103	-	-
	Alju12g0035	582	PRINTS	Cellular retinaldehyde-binding protein signature	250	269	-	-
	Alju12g0035	582	ProSiteProfiles	CRAL-TRIO lipid binding domain profile.	123	297	IPR001251	-
	Alju12g0035	582	PANTHER	CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED	18	576	-	-
	Alju12g0035	582	CDD	SEC14	122	292	IPR001251	-
	Alju12g0035	582	Gene3D	-	31	110	-	-
	Alju12g0035	582	FunFam	SEC14 cytosolic factor	111	323	-	-
	Alju12g0035	582	Pfam	CRAL/TRIO domain	129	291	IPR001251	-
	Alju12g0035	582	SUPERFAMILY	CRAL/TRIO domain	124	315	IPR036865	-
	Alju12g0035	582	Coils	Coil	544	568	-	-
	Alju12g0035	582	SUPERFAMILY	CRAL/TRIO N-terminal domain	52	119	IPR036273	-
	Alju12g0035	582	MobiDBLite	consensus disorder prediction	1	38	-	-
	Alju12g0035	582	Pfam	CRAL/TRIO, N-terminal domain	75	102	IPR011074	-
	Alju12g0035	582	Gene3D	-	111	322	IPR036865	-
	Alju12g0035	582	MobiDBLite	consensus disorder prediction	318	342	-	-
	Alju12g0035	582	MobiDBLite	consensus disorder prediction	318	337	-	-
	Alju12g0035	582	SMART	CRAL_TRIO_N_2	78	103	IPR011074	-
	Alju12g0035	582	SMART	sec14_4	123	294	IPR001251	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju12g0035	Alju-ChrAlju12	570198	575538	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju12g0035	84	288	Acyl Lipid Metabolism Gene Families	AT5G47730	30.189	6.41e-22	95.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju12g0035	12	570198	575538	Alju12g0035	12	570198	575538	ECH
	Alju02g1982	02	19130875	19133878	Alju12g0035	12	570198	575538	ECH