Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju11g0776 ATGCCTCTCAGGCTCGAAATTAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAGTCCGTGGATCTACATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCAGGAACTGTCTGTATTTGGAACTACCAATCCCAGACCATGGCTAAGTCTTTTGAGGTCACTGAATTACCAGTTAGGTCAGCCAAGTTTGTTGCACGCAAACAATGGGTGGTTGCTGGAGCTGATGATATGTTCATTCGTGTATATAACTACAACACAATGGACAAAGTTAAAGTTTTTGAGGCACATACAGATTACATTAGGTGTGTGGCAGTTCATCCTACCCTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAGAAAGGCTGGATTTGTACTCAGATATTTGAGGGGCACTCTCATTATGTGATGCAAGTGACATTTAATCCTAAAGACACCAACACCTTTGCCAGTGCATCTCTTGATCGTACTATAAAGGTTTGGAATCTTGGCTCTCCTGATCCCAATTTTACATTGGATGCCCATCAGAAAGGGGTGAACTGTGTTGATTACTTCACAGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCTAAGGTGTGGGACTATCAGGCCAAAAGTTGTGTTCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTTTGCTTTCACCCTGAACTTCCTATAATCATTACGGGTTCTGAGGATGGCACTGTACGCATATGGCACTCGACGACTTATAGGCTTGAGAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACATGAAAGGTTCACGCCGGGTTGTCATTGGCTATGATGAAGGAACTATCATGGTCAAACTTGGTCGAGAAGAGCCTGTAGCCAGCATGGATAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACAGTCAATATAAAGAGTGTAGGAGCAGATGTGGAGGTGGCCGATGGAGAAAGGCTACCTTTGGCTGTCAAGGAATTGGGCACTTGTGATCTCTATCCGCAGTTTTTAAAGCACAATCCAAATGGCAGATTTGTTGTTGTGTGTGGAGATGGTGAGTATATCATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGATCAGCACTAGAGTTTGTTTGGTCTTCGGATGGAGAATATGCTGTCAGAGAAAGTACATCAAGGATTAAAATTTTTAGCAAAAATTTTCAGGAAAAGAAGAGCATCCGACCTACATTTTCAGCTGAACGAATATTTGGTGGCACTTTACTGGCAATGTGCTCAAATGACTTCATCTGCTTTTACGATTGGACTGAATGCAGGTTGATCCGTCGCATTGATGTTAATGTGAAAAACCTTTACTGGGCTGATAGTGGTGATCTACTGGCAATTGCAAGTGATACATCTTTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCGTCTTTGGATAGTGGAAGACCTGTTGATGAGCAGGGTGTTGAAGAAGCCTTTGATCTCCTTCATGAAATGAATGAACGTGTCAGGACTGGCATCTGGGTTGGGGATTGTTTCATCTACAACAATTCCTCCTGGAGACTTAACTACTGCGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGCCCTATGTACTTGCTGGGATATCTCGCCAGCCAAAGTAGGGTTTATTTGATAGACAAAGAGTTCAATGTTATGGGTTACACGCTGCTTTTAAGCTTGATTGAGTACAAGACTCTTATGATGCGTGGTGATCTGGAAAGAGCCAATGAAGTTCTGCCAACTATTCCTAAAGAGCATCATAACAGTGTGGCTCGTTTCCTGGAATCACGGGGGATGATAGAGGAAGCTCTTGAAGTAGCTACTGACCCTGACTACAGTTTTGAGCTAGCCATACAGCTTGGAAGATTAGATGTTGCTAAGAGTATTGCTACAGAAGTGCACAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCAATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGCCTAAAGAATGCAATGGATTTGAGCGGTTTATTACTGCTTTATTCTTCTTTAGGAGATGCGGAAGGAATATCAAAACTTGCAACCCTTGCCAAAGAGCAAGGAAAAAACAATGTTGCATTCCTGTGCTTATTTATGTTGGGTAGGCTTGAAGACTGCCTGCAATTGTTGGTAGAAAGCAATCGGATTCCTGAGGCAGCTCTAATGGCACGATCTTATCTCCCTAGTAAGGTCTCCGAGATTGTAGCAATTTGGAGAAAAGATCTCAGCAAGGTTAATCCAAAAGCTGCTGAATCATTAGCTGATCCTGAGGAGTATCCCAATTTGTTTGAAGACTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAAGGGGTGTTTATCCTCCAGCAGAAGAGTACATTAACCATGCTGCCGAATCTCGTGTTACCCTTGTTGAAGCATTTAGAAACATGCAGATTGAAGATGCGGATGAGCCTCTTGAAAATGGGGACTCAAATCATGAGTTGACTGAACAAAATGGAGAAGAGCATGTCACAGAGGAACTGAATGGAGAGGTAGGAAGCCAAGAGGAAGCAGTTGTAGTGGATGCTGATTCTGCAGATGGTGCGGTACTCGTTAATGGCAATGAGGCTGATGAACATGTGAAAATCCAATTTTGTCTCTGTGCTTACATCACATCACTAGTTAGCATCAAGAACAGTCGGTTCCAGCTCCTAGGAATATTTAAGGTTTTCTGA 2814 0.4254 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKVWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQAKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEVADGERLPLAVKELGTCDLYPQFLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSRIKIFSKNFQEKKSIRPTFSAERIFGGTLLAMCSNDFICFYDWTECRLIRRIDVNVKNLYWADSGDLLAIASDTSFYILKYNRDVVASSLDSGRPVDEQGVEEAFDLLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLMMRGDLERANEVLPTIPKEHHNSVARFLESRGMIEEALEVATDPDYSFELAIQLGRLDVAKSIATEVHSESKWKQLGELAMSTGKLEMAEECLKNAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETRGVYPPAEEYINHAAESRVTLVEAFRNMQIEDADEPLENGDSNHELTEQNGEEHVTEELNGEVGSQEEAVVVDADSADGAVLVNGNEADEHVKIQFCLCAYITSLVSIKNSRFQLLGIFKVF 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju11g0776 937 PANTHER COATOMER 5 313 - -
Alju11g0776 937 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Alju11g0776 937 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Alju11g0776 937 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Alju11g0776 937 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Alju11g0776 937 FunFam Coatomer subunit beta 11 300 - -
Alju11g0776 937 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Alju11g0776 937 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Alju11g0776 937 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Alju11g0776 937 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 215 - -
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Alju11g0776 937 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Alju11g0776 937 SMART WD40_4 46 85 IPR001680 GO:0005515
Alju11g0776 937 SMART WD40_4 174 215 IPR001680 GO:0005515
Alju11g0776 937 SMART WD40_4 218 257 IPR001680 GO:0005515
Alju11g0776 937 SMART WD40_4 131 171 IPR001680 GO:0005515
Alju11g0776 937 SMART WD40_4 4 43 IPR001680 GO:0005515
Alju11g0776 937 SMART WD40_4 88 127 IPR001680 GO:0005515
Alju11g0776 937 CDD WD40 17 297 - -
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Alju11g0776 937 CDD Coatomer_WDAD_beta-like 304 779 - -
Alju11g0776 937 FunFam Coatomer subunit beta 590 798 - -
Alju11g0776 937 PIRSF Beta'-COP 2 884 IPR016453 -
Alju11g0776 937 Gene3D - 590 798 - -
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Alju11g0776 937 Gene3D - 11 300 IPR015943 GO:0005515
Alju11g0776 937 SUPERFAMILY NHL repeat 220 492 - -
Alju11g0776 937 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju11g0776 Alju-ChrAlju11 9145721 9158418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju11g0776 15 367 Miscellaneous Gene Families AT5G08390 19.890 8.17e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0776 11 9145721 9158418 Alju05g1608 05 46757304 46760305 CCT
Alju11g0776 11 9145721 9158418 Alju11g0776 11 9145721 9158418 ECH