Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g1608 ATGCAGGCTTTCTCCCTTCAAATTGAGAATGAATTTGTTCAGAACTCAGAGAGAGTGAAATCTGTTGATCTGCATCCAACTGAACCATGGATTCTAGTGGGTTTGTATTCAGGAACCATTTCCATTTGGAACTACCATACCAAGACTGAAGAAAAGTCTTTCAAGATCAGTGAATCGCCAGTGAGATCAGCCAAGTTCATAGCTCGTGAAAACTGGATTGTTGCTGCAACCGACGACAAATTTATCCGGGTCTACAATTACCAAAACACAGAGAAGGTGACAGAGTTTGAGGCTCATAAAGATTACATAAGGAGTTTGGTTATACATCCTACCTTGCCATATGTGATATCAGCTTCTGATGATCAAGTTCTGAAGGTTTGGGATTGGACTAATGGTTGGTCAAGTATTCAGAACTTTGAAGGTCACTCTCATTATGTGATGCAAGTTGCATTAAATCCAAATGACGAATCTTCCTTTGCAACTGCTTCCCTTGATGGCACTTTGAAGATTTGGAATCTAAACTCTTCAACTTCAAACTTGACCTTGGAAGGACACTTGAAAGGGGTGAATTGTGTTGAGTATTTCACAAGCAATGACAAACAGTATTTGTTGAGTGGTTCTGATGATTACACTGCTAAGGTTTGGGATTATCATACTGAAAGTGTTGTACAAACGTTGGAAGGACATAAAAACAACGTTACAGCAGTCTGTGTTCATCTTGAGTCTCCTATTCTAATCACAGCTTCAGAGGATAACACTGTTAAAATATGGGATTCTATCACTTATAGGCTTCAAACCACGTTGAACTTTGGTCTAGAGAGAGTATGGAGTATTGGATACAACAAAGGATCACATCAGCTTGCTTTTGGTTGTGACAGAGGATTTATCATAGTGAAGATTGACTGCTCTTCTCAGAACCTTCGTGCTGCCAAACAAGACTAG 942 0.396 MQAFSLQIENEFVQNSERVKSVDLHPTEPWILVGLYSGTISIWNYHTKTEEKSFKISESPVRSAKFIARENWIVAATDDKFIRVYNYQNTEKVTEFEAHKDYIRSLVIHPTLPYVISASDDQVLKVWDWTNGWSSIQNFEGHSHYVMQVALNPNDESSFATASLDGTLKIWNLNSSTSNLTLEGHLKGVNCVEYFTSNDKQYLLSGSDDYTAKVWDYHTESVVQTLEGHKNNVTAVCVHLESPILITASEDNTVKIWDSITYRLQTTLNFGLERVWSIGYNKGSHQLAFGCDRGFIIVKIDCSSQNLRAAKQD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g1608 313 PANTHER COATOMER 7 302 - -
Alju05g1608 313 CDD WD40 18 288 - -
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 258 - -
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 258 IPR001680 GO:0005515
Alju05g1608 313 Gene3D - 11 301 IPR015943 GO:0005515
Alju05g1608 313 SMART WD40_4 219 258 IPR001680 GO:0005515
Alju05g1608 313 SMART WD40_4 175 216 IPR001680 GO:0005515
Alju05g1608 313 SMART WD40_4 89 128 IPR001680 GO:0005515
Alju05g1608 313 SMART WD40_4 47 86 IPR001680 GO:0005515
Alju05g1608 313 SMART WD40_4 132 172 IPR001680 GO:0005515
Alju05g1608 313 SMART WD40_4 5 44 IPR001680 GO:0005515
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 216 - -
Alju05g1608 313 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Alju05g1608 313 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Alju05g1608 313 PRINTS G protein beta WD-40 repeat signature 159 173 IPR020472 -
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 181 IPR001680 GO:0005515
Alju05g1608 313 SUPERFAMILY WD40 repeat-like 4 297 IPR036322 GO:0005515
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 53 IPR001680 GO:0005515
Alju05g1608 313 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Alju05g1608 313 Pfam WD domain, G-beta repeat 181 216 IPR001680 GO:0005515
Alju05g1608 313 Pfam WD domain, G-beta repeat 17 44 IPR001680 GO:0005515
Alju05g1608 313 Pfam WD domain, G-beta repeat 92 128 IPR001680 GO:0005515
Alju05g1608 313 Pfam WD domain, G-beta repeat 135 172 IPR001680 GO:0005515
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 139 175 - -
Alju05g1608 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 225 IPR001680 GO:0005515
Alju05g1608 313 FunFam Coatomer alpha subunit, putative 12 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g1608 Alju-ChrAlju05 46757304 46760305 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g1608 85 290 Miscellaneous Gene Families AT5G08390 25.121 7.34e-14 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju11g0776 11 9145721 9158418 Alju05g1608 05 46757304 46760305 CCT
Alju05g1608 05 46757304 46760305 Alju05g1608 05 46757304 46760305 ECH