Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0241 ATGACAGCGACGCGCAGCGAGAGAAGCAGCAGCCAAAAAGCCATCCAAACAAAGCCGAACTCTCTCTTTAAGACTCCTTGTGGTTTCCTCTGCCCCCTCACCCTTTGGTCTCTCTCGCTCTTTCTGCTTCTTCGTTATCGTGCGCTTCTGAAACAATCTCGTCCTCACAGTTTCATCATCTCGATCTCTCAACTGGCAATCATGAGTGACGAAGGAGAAAGGACTTGCCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGCTGGCATCACATAATGGACATGGCCGAGAAGGATGACACTGAGGGGAGATGCCCTGCGTGTCGAACTCCATATGACAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGATTGGTGGCAGAAATTAATACTGAAAAGAAGATGAAGAGTCAGAAAGCAAAGTCTAAGTCTTCTGAAGGCCGGAAGCAGCTGAGCAGTGTGCGAGTGATTCAGCGGAATCTTGTCTATATAGTTGGATTGCCGCTTAATCTGGCAGATGAAGAAATTCTTCAGCGTCGAGAGTATTTTGGTCAGTATGGGAAAGTCTTAAAAGTGTCAATGTCTCGGACAGCAGCTGGTGTCATTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAGGAGGAAGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTCTTGGATAGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCCTGGCTCCGAAACATGCCTTGCAGCAATCCTGATTGTTTATATCTGCATGACATTGGCTGTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAAGCAGAGTTCAACAAATTACTGGTGCCACAAATAATATGCAACGGCGGTCAGGGAATTTGTTGCCACCCCCAGTTGATGATTACATAAACCATTCTGCTGGAAAACCCATTGTGAAAAATGCCACAAATAATCCCTCTAGCACTGTGAGAGGTTCACCTCCAAATGGAAGTTCTGGAAGATCTATAACTCTAAATCCTGCTACTGCATGGGGAACAAGAGCTACAAATTGTCAGCCCCCTACTGGAGGTTTATTAAATGGACCACCTAAGCCAAAAGCTGATGCTGTTAGTGGCACACTGGCCTTTTCTTCAGCTGTTGCATGTTCAAGCCAGAACTCTTCATTGCACAGTGATGCAGGCAAGAGGCCACCGTCAAGTGACGGCAGTCATAATAACCTTGGAGTACAAAATGACTCATTAAAACCGGTAAAGCAATTCAATAGCATGGACAATCCAAGTAATGCAGGTGAAAAGACTGCTACATCTGATGGTTCACTTGCACCTGTGAATTCAAACAGCTTGTTGTCTTCTTTACCATCATCCCGAGATGGTGATAGAGTTAGTTGTACTACATCAAACACAGCAAATTCTACTGACATCACTGGGCAGTCATGCAGCTCTGGTCCTGAGGAAGCTACTATTGTTACCAATGAGGAGATTCAGAACCTGTGCTCCAATCTGTCCTCTGTTAACATTGATAGAAATGGCCAAAATGAACACTTTGGCATGGTCAGATCTGATAGCCCCCCTTCTGATTATGTCTTGACAAAGTCTCCTCAACTTCAAGCATCACAACAGCATAAAGATGTCAAATTTAGAGATGTGCAATTTTCCAGCGACTCTGGTAAAGCTGCTCCATCTGATTGGGAGCAGTCTGATTGGAAATTAAATTCACAAGCCCATCTAGTACCAGCTACAACTGACTTGGAAGATGATATAACTTCTTTTGATAATCAAAGGCTCAAAGATCCAGAAGTTGTTTGTCATTCTCCTTACATGCCTAAGTCAACAAGTTTTGTTCATGTCCCAATCCATTCTAATCAGAGTCTCATCCAACGTGGGGAGCAACCCCCTGCTATGAATGTTGATTTTGTATCTGCAGATTCTAAGGTTGGGGATGATTCTCTGTTACATCCATCCACTGTATTATGTAATGGTTATCCTGATAAATTGGTCGGCAGCTGCTCTCCTGGTTTGAATGGCACCACTGATTGTACCTCACTTCAGGATGTAAGAAATGAACAATGCATAGGAAGATTATTCACTGAATCAGTTGGTGCTGGGAGTGACGCTGCATTGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACCTTGATGCATGGGATGACTCACTAACGTCACCGCAGACTTTGGTTAAGTTGCTTGGTGATAACACCGATAGCCAGTATGTTCCTTTGAAGAAATCCAGTTCTTTGAAAGTGCAGAATAATAGTCAGTCAAGATTCTCTTTTGCAAGGCAGGATGAACCTAAAATCCAAGCATTTAATGCAAACCCATCTTATGGTATTAGTGATCAATTTCCAAGGAGGGGCTCTTTCATACAGGATTTTTCTGAAAGAGACTTGTATAATGAGAGGAGGTTGGGTATGGCAAATGGCTTTTCTTCCTGTAAACTTGAGGAATCTGAAAATCTAGGCAGCGGTCACTTTGTTGCTTCTAATAAGCATTCTGCTGTTTCTAGAGCTCAAATTTCTGCTCCTCCAGGATTTTCAATTCCAAGTAGGCCTCCGCCACCAGGTTTCTCTTCTTATGAGAGAGTGGAACAGGCTTTCAGTTCAGTGGCCGGAAATTCATTGCTTGACCCATCCTTGTTAAGAAATTCATATCAGACACCCACAGCTGGAAATATTGGGGGTACAGGGGACATTGAATTAATAGATCCTGCTATTTTGGCTGTTGGCACTGGTAGACTTCAAGGTCCATTAAACAGCCCAGGGTTGGACATCAGATCTAGTTTCTCCCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAATTGTTGATGCAAAGATCTCTCTCACAACCACAGAACAGATTTTCTGAAATAGGGAGTACATTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGATCAATCACAAGTCGGCAATTTGACCCCTTTTGCTCAGTTGTCCTTGCAGCAGTCTAGAAATGCTCTTTTGTCTAATGGTCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAGTAGTCTTGGGGTGGCTGAGCTACTAAGAAATGAAAGACTTGGAATTAACAAGTTATATGCAGGATATGATGATTCAAAATATCGGATGCCAAACTCTGGGGATCTTTACAACCGAACTTATGGGATGTGA 3294 0.425 MTATRSERSSSQKAIQTKPNSLFKTPCGFLCPLTLWSLSLFLLLRYRALLKQSRPHSFIISISQLAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTEKKMKSQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEILQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLDSRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHDIGCQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNLLPPPVDDYINHSAGKPIVKNATNNPSSTVRGSPPNGSSGRSITLNPATAWGTRATNCQPPTGGLLNGPPKPKADAVSGTLAFSSAVACSSQNSSLHSDAGKRPPSSDGSHNNLGVQNDSLKPVKQFNSMDNPSNAGEKTATSDGSLAPVNSNSLLSSLPSSRDGDRVSCTTSNTANSTDITGQSCSSGPEEATIVTNEEIQNLCSNLSSVNIDRNGQNEHFGMVRSDSPPSDYVLTKSPQLQASQQHKDVKFRDVQFSSDSGKAAPSDWEQSDWKLNSQAHLVPATTDLEDDITSFDNQRLKDPEVVCHSPYMPKSTSFVHVPIHSNQSLIQRGEQPPAMNVDFVSADSKVGDDSLLHPSTVLCNGYPDKLVGSCSPGLNGTTDCTSLQDVRNEQCIGRLFTESVGAGSDAALDKGESSIISNILSMDLDAWDDSLTSPQTLVKLLGDNTDSQYVPLKKSSSLKVQNNSQSRFSFARQDEPKIQAFNANPSYGISDQFPRRGSFIQDFSERDLYNERRLGMANGFSSCKLEESENLGSGHFVASNKHSAVSRAQISAPPGFSIPSRPPPPGFSSYERVEQAFSSVAGNSLLDPSLLRNSYQTPTAGNIGGTGDIELIDPAILAVGTGRLQGPLNSPGLDIRSSFSPQLNYFENEARLQLLMQRSLSQPQNRFSEIGSTFSQIGDSYGISSRLDQSQVGNLTPFAQLSLQQSRNALLSNGQWDGWNEVQSGSSLGVAELLRNERLGINKLYAGYDDSKYRMPNSGDLYNRTYGM 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0241 1097 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 263 IPR000504 GO:0003723
Alju10g0241 1097 CDD mRING-HC-C4C4_CNOT4 75 125 IPR039515 -
Alju10g0241 1097 MobiDBLite consensus disorder prediction 340 386 - -
Alju10g0241 1097 MobiDBLite consensus disorder prediction 335 400 - -
Alju10g0241 1097 Pfam RING/Ubox like zinc-binding domain 76 128 - -
Alju10g0241 1097 SUPERFAMILY RING/U-box 68 133 - -
Alju10g0241 1097 SMART rrm2_1 178 259 IPR003954 GO:0003676
Alju10g0241 1097 CDD RRM_CNOT4 172 271 IPR034261 -
Alju10g0241 1097 ProSiteProfiles Zinc finger RING-type profile. 76 124 IPR001841 -
Alju10g0241 1097 MobiDBLite consensus disorder prediction 416 513 - -
Alju10g0241 1097 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 144 IPR013083 -
Alju10g0241 1097 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 68 1091 IPR039780 GO:0004842|GO:0030014
Alju10g0241 1097 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 68 144 - -
Alju10g0241 1097 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 257 IPR000504 GO:0003723
Alju10g0241 1097 SUPERFAMILY RNA-binding domain, RBD 171 257 IPR035979 GO:0003676
Alju10g0241 1097 Gene3D - 178 259 IPR012677 -
Alju10g0241 1097 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 178 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0241 Alju-ChrAlju10 1864823 1872034 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0151 02 1266341 1274616 Alju10g0241 10 1864823 1872034 CCT