Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0151 ATGAACGTTCAAAGAGGATCAGACGACAGCGACGGCCGCAATAAGAAGCAACACAGCGCAGCACAGCCCAAAAGCAAAGGCCATCCAGACGAAGCATTCTCTTTCTTTCAAAATACTCCTCTCTGTCTCTCTTACCCCTTTGGTCTCTCGCTCTCTTTCTGCTTATCCTTCATCGCGCCCTTGTCAAGCAACTTCGTTCTCACTTTTCTTTTTCCGATCTCACCACTGGCAATCATGAGCGACAAAGGAGAAAAAATCTGTCCTCTGTGCGCAGAAGAGATGGATTTGACAGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTGTGGTGTTGGCATCACATATTGAACTTGGCTGAGAAGGATGACACAGGGGGCCGATGCCCAGCATGTCGTGCGCCTTATGACAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAAGTAATATGGAGAAAAAGATGAAGAACCAGAAAGCAAAGTCTAAGTTATCTGAAGGTAGGAGGCAACTGAGCAATGTGCGAGTGATTCAGAGAAACCTTGTATTCATAGTTGGACTGCCTCTTAATCTGGCAGATGAAAGTCTTCTTGAGCAGCAGGATTATTTTGGTCAATATGGGAAGGTCTTGAAAGTGTCAGTGTCTCGAACTGCTGCTGGTGTTATTCAACAGTTTCCAAACAGTACATGTAGTGTATATATAACTTATTCAAAGGAAGATGAAGCAATTCGGTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAAGGCATGTTTTGGAACCACAAAATATTGTCATGCATGGCTTCGAAATGCGCCTTGCAGCAATCCTGATTGTCTATATCTGCATGAGGTTGGTTCTCAAGAAGATAGTTTTACGAAAGATGAAGTTATTTCAGCATACACTAGTTGTCAAGTTCAAATTGCTGGCGCTGCAAACAATACGCAACAGCATTCAGGGAATGTATTGCCACCTCCTATAGATGATTACCTATGTCATTCGTCAGGAAAACCCATTGCAACAAATGCTTCAAGTAACTCTTCTAGCAATATGAAAGGTTCGCCTCCTAATGGAAGTTCAGGGAGGTCTACAGTTCATCCTGCTGCCGCTGCATGGGTCGCACAGGCTACAAGCTGTCGGCCCCATGCTGGAGGCTTATTGTGTACAAATGGACCATCTAAAGCAAAACCTGACACTGTCAGCAGCACCCTACCCCTTTCTTCAGTTGTTGCATGCACAATTCAGGCTTCTGCATTGCACAGTGATGTGATCCAGAGGTCAACATCAAGTGATGGGAATCTGATTATCCTGCCTAGAGTGAATAAAGAATTGTTCAATCCAGTTAAACAATACAATAGTACGGATGATCTACAGAGAGGTGGTAAAAAAAATGTAATTTACAATGTTTCTTCCGTACCCGTGAATTTGAACAGACAGCTGTCTTCTCAAACATTACCCAGAAATAGTGATAGAGGCACTTATACTACAGTTAACACAACAAATTCTACTGACATCCCCAGCCAGTTGTACAGGTCTGGTCCCGAGGAAGCAATTGCTGCTACCAATGAAGAGATTCAGAAGCTGTGCTGTGATATGTCCTTAATTAACATTGATAGAGATGTCCGAAATGAACACCTTGGTATAACCAAACCTAATAGCCCTCCATCTGATTGTAAAATGATTAGATCTTCTCTAATTAAAGGGTCACAGAATGATACTGATAAATTTAGAGATGCACTAGCTAACACAGTAGCTAGCAAAGATGCTACATCAGATAATGGGTTCTGCATTCCAACGGATCAGTGTGATTGGAGGTTAGACTCACAAGATCATTCAGCATCAAATACAACTGAAGTGGAGGATGATACACCTTTTGATAATCTAAGATTTAAGGATCCAGAAGTTCGTCATTCTTCTTATTTGCCAAAATCATCACATTTTGTTGATGTATCTAACCATCCTGGTCCTTATCTTCTGCAGCATAGTGAACCTTGCAGTGCTTTAAATGCTGGTTCTTTATCTGCAGATAACAAAGTTGGGGATGATTCTTTATTACATGCATCTAGCATATTATTTAATGGTTACCCTGAGAAATTGATCAACAGCAGCTCTTATGGTTTAATAAATAGCACCATCGAACATTCTGTAGTGCTTCAAGATGAAAGAAATGAGCAACGCATCAGAAGTTTTCCCAATGTAGCAGTTGATGTTAGAAGTGATGCTGCTATGGATAAGGGTGAAAGTAGTATAATTTCTAATATATTGTCAATGAACTTTGAACCGTGGGAAGACTCATTGACACCACCACAAAATTTGGCTAAATTGTTGGGTGACAACCCTTATAACCAATGTGATCCATTAAAAAATTCTGATTCATGGAAAGTCCAGAATAATAGCCAGTCAAGATTCTCTTTTGCAAGACAGGAGGAATCCAACATTCAAACATTCGATGCACTTCCATGTATTGGTGTTGGTGAGCAATTGACGACCTGCTCACTCATCCAGGACTATGCAGAAAGAGACCCGTATTTACATAATTTGGGTATTGGAAATGGTTTCCCTATCAGTATTGAAAATTTAGGCAGTGGTTACTCTGTTACTTCTAATAAGCATTCTGGAGACATGGAATTTAATGATCCTGCTGTCTTGGCAGTTGGTAAGGGGAGATTTGAAGGTTCACTAAATAGCACTGGGCTGGACAGGAGATCAAATTTGGTACGACAATTTAATCTCTTAGAAAATGAGGCCAGACTTCAATTATTGATGGAACAATCACTCTCACAGCAGCAGAACCTTCAATTTTCTGAATTTGGGAATACCTTTTCTCAGCTTAGTGATTCTTATGGACTCTTTTCAAGATTAGATCAATCACAACTCAGTAATGTGTTCCCTTTTCCCCAGTTGCCTTTACAGCAGACTAGAAATGCAATTTTGCCTAATGGACATTGGGGTGGGTGGAGTCAGGTGCATAGTGGAAGCAGTCTGGGAGTGGCTGAGCTTATGAGAAATGAAAGCTTTGGGCTTAAGAAGTTTTATGCAGGATATGAAGATTCAAAATATAGGATGCAAAATTCAGGTGATCTTTACAACAGAGCATATGGGATGTAA 3144 0.409 MNVQRGSDDSDGRNKKQHSAAQPKSKGHPDEAFSFFQNTPLCLSYPFGLSLSFCLSFIAPLSSNFVLTFLFPISPLAIMSDKGEKICPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILNLAEKDDTGGRCPACRAPYDKEKIVGMAANCERLVAESNMEKKMKNQKAKSKLSEGRRQLSNVRVIQRNLVFIVGLPLNLADESLLEQQDYFGQYGKVLKVSVSRTAAGVIQQFPNSTCSVYITYSKEDEAIRCIQSVHGFVLEGRPLKACFGTTKYCHAWLRNAPCSNPDCLYLHEVGSQEDSFTKDEVISAYTSCQVQIAGAANNTQQHSGNVLPPPIDDYLCHSSGKPIATNASSNSSSNMKGSPPNGSSGRSTVHPAAAAWVAQATSCRPHAGGLLCTNGPSKAKPDTVSSTLPLSSVVACTIQASALHSDVIQRSTSSDGNLIILPRVNKELFNPVKQYNSTDDLQRGGKKNVIYNVSSVPVNLNRQLSSQTLPRNSDRGTYTTVNTTNSTDIPSQLYRSGPEEAIAATNEEIQKLCCDMSLINIDRDVRNEHLGITKPNSPPSDCKMIRSSLIKGSQNDTDKFRDALANTVASKDATSDNGFCIPTDQCDWRLDSQDHSASNTTEVEDDTPFDNLRFKDPEVRHSSYLPKSSHFVDVSNHPGPYLLQHSEPCSALNAGSLSADNKVGDDSLLHASSILFNGYPEKLINSSSYGLINSTIEHSVVLQDERNEQRIRSFPNVAVDVRSDAAMDKGESSIISNILSMNFEPWEDSLTPPQNLAKLLGDNPYNQCDPLKNSDSWKVQNNSQSRFSFARQEESNIQTFDALPCIGVGEQLTTCSLIQDYAERDPYLHNLGIGNGFPISIENLGSGYSVTSNKHSGDMEFNDPAVLAVGKGRFEGSLNSTGLDRRSNLVRQFNLLENEARLQLLMEQSLSQQQNLQFSEFGNTFSQLSDSYGLFSRLDQSQLSNVFPFPQLPLQQTRNAILPNGHWGGWSQVHSGSSLGVAELMRNESFGLKKFYAGYEDSKYRMQNSGDLYNRAYGM 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0151 1047 Pfam RING/Ubox like zinc-binding domain 87 139 - -
Alju02g0151 1047 SUPERFAMILY RING/U-box 79 144 - -
Alju02g0151 1047 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 274 IPR000504 GO:0003723
Alju02g0151 1047 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 268 IPR000504 GO:0003723
Alju02g0151 1047 MobiDBLite consensus disorder prediction 1 29 - -
Alju02g0151 1047 ProSiteProfiles Zinc finger RING-type profile. 87 135 IPR001841 -
Alju02g0151 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
Alju02g0151 1047 SUPERFAMILY RNA-binding domain, RBD 182 268 IPR035979 GO:0003676
Alju02g0151 1047 CDD mRING-HC-C4C4_CNOT4 85 135 IPR039515 -
Alju02g0151 1047 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 79 1041 IPR039780 GO:0004842|GO:0030014
Alju02g0151 1047 Gene3D - 189 270 IPR012677 -
Alju02g0151 1047 MobiDBLite consensus disorder prediction 353 379 - -
Alju02g0151 1047 SMART rrm2_1 189 270 IPR003954 GO:0003676
Alju02g0151 1047 CDD RRM_CNOT4 183 282 IPR034261 -
Alju02g0151 1047 MobiDBLite consensus disorder prediction 353 376 - -
Alju02g0151 1047 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 189 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0151 Alju-ChrAlju02 1266341 1274616 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0151 02 1266341 1274616 Alju10g0241 10 1864823 1872034 CCT
Alju02g0151 02 1266341 1274616 Alju02g0151 02 1266341 1274616 ECH