Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g1049 ATGGGTTTGTCTAGATCATCGGGCGCCATGACACTACTGGTGTTCATGGTCTTCACCGTGTCTTCGGCCTTGGATATGTCCATAACCTCCTACGACCGAACCCACCCCGATCACTCTACCTGGACGACGGATTCCGAGGTTATGGCAATATACGAGCACTGGCTTGTAAAACATGGCAAGGCCTACAATGCTCTGGGCGAGAAGGAGAAGAGATTCGAAATTTTCAAGGATAATCTCAGGTTCATCGATGAGCACAACGCTGGGAATCGGACGTACAAAGTCGGGTTGAACCGATTCGCTGATCTTACCAATGAGGAGTACAGGGCCAAGTACCTGGGAACCAAGATCGATCCCAAGAGGAGGATTGTCAAGACCAGGAGCAACCGTTACGCCTCACAGGTCGGCGACAAATTGCCGGAATCTGTTGATTGGCGGAAGGAAGGTGCGGTCGTCCAAGTCAAAGATCAAGGAAGTTGCGGGAGTTGCTGGGCATTCTCAACCGTAGCTGCAGTGGAAGGAATAAACAAATTAGTGACAGGCGATCTAATTTCACTATCTGAGCAAGAACTGGTGGATTGTGATACAAAAAATAATGAAGGGTGCAATGGGGGATTAATGGACTATGCCTTTCAGTTCATCATCGACAATGGTGGCATTGACACTGAAGAGGATTATCCTTACCGTGCTGTTGATGGCCAGTGTGACCAATATAGGAAAAATGCGAAAGTTGTGACAATTGATGGCTATGAGGATGTTCCTGCCAATGATGAGAAAGCATTGAAAAAAGCTGTTGCAAATCAACCAGTGAGCGTTGCAATTGAAGCAGGCGGCAGGGAATTTCAATTATATGTAACTGGTTTATTTACAGGAAGATGTGGTACAGGACTAGATCATGGTGTTACGGCTGTTGGTTATGGCACAGAAAATGGCGTGGATTACTGGATTGTGAAGAACTCCTGGGGATCAAGCTGGGGAGAGGAAGGGTACATTAGAATGGAGCGTAATGTGGGATCAACCAATACAGGCAAGTGTGGCATTGCGATGGAGGCCTCCTATCCAACAAAGAAAGGCCTTAATCCCCCAAAGCCCGAACCATCTCCTCCTTCACCGGTGAAGCCACCCACCGTTTGTGATAATTACTACAGCTGTCCGGAGAGCACTACATGCTGCTGCCTCTATGAGTATGGAAAGTATTGCTTTGCCTGGGGATGCTGTCCTCTTGAGGCTGCTACCTGCTGTGATGACCACTACAGTTGCTGCCCTCACGACTATCCCATCTGTAACCTTGACGCTGGCACCTGTCTTATGAGTGAGACCACCCCATTTGGAGTGAAGGCAATGATGCGTTTTCCAGCTAAACCCCATTTTTCATTTGGAGTGGCGCCAATGGAATGGAGGACTGAATGA 1407 0.4819 MGLSRSSGAMTLLVFMVFTVSSALDMSITSYDRTHPDHSTWTTDSEVMAIYEHWLVKHGKAYNALGEKEKRFEIFKDNLRFIDEHNAGNRTYKVGLNRFADLTNEEYRAKYLGTKIDPKRRIVKTRSNRYASQVGDKLPESVDWRKEGAVVQVKDQGSCGSCWAFSTVAAVEGINKLVTGDLISLSEQELVDCDTKNNEGCNGGLMDYAFQFIIDNGGIDTEEDYPYRAVDGQCDQYRKNAKVVTIDGYEDVPANDEKALKKAVANQPVSVAIEAGGREFQLYVTGLFTGRCGTGLDHGVTAVGYGTENGVDYWIVKNSWGSSWGEEGYIRMERNVGSTNTGKCGIAMEASYPTKKGLNPPKPEPSPPSPVKPPTVCDNYYSCPESTTCCCLYEYGKYCFAWGCCPLEAATCCDDHYSCCPHDYPICNLDAGTCLMSETTPFGVKAMMRFPAKPHFSFGVAPMEWRTE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g1049 468 FunFam Cysteine protease 1 374 437 - -
Alju08g1049 468 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Alju08g1049 468 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Alju08g1049 468 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Alju08g1049 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Alju08g1049 468 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Alju08g1049 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Alju08g1049 468 CDD Peptidase_C1A 139 353 IPR039417 -
Alju08g1049 468 Gene3D Cysteine proteinases 33 356 - -
Alju08g1049 468 SUPERFAMILY Cysteine proteinases 42 354 IPR038765 -
Alju08g1049 468 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Alju08g1049 468 Gene3D Granulin 374 436 IPR037277 -
Alju08g1049 468 SUPERFAMILY Granulin repeat 374 408 - -
Alju08g1049 468 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 41 352 IPR013128 GO:0008234
Alju08g1049 468 SMART Inhibitor_I29_2 51 107 IPR013201 -
Alju08g1049 468 FunFam Cysteine protease 1 27 356 - -
Alju08g1049 468 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Alju08g1049 468 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Alju08g1049 468 SMART GRAN_2 377 434 IPR000118 -
Alju08g1049 468 Pfam Granulin 388 435 IPR000118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g1049 Alju-ChrAlju08 7898953 7902392 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g1929 07 45587310 45590122 Alju08g1049 08 7898953 7902392 CCT
Alju08g1049 08 7898953 7902392 Alju08g1049 08 7898953 7902392 ECH