Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0823 ATGGGGAAGCCCGCCGGGAAGAAGAAGGATCTCTCAGACCATCACAAGCCTGCAAATGGAAACGGCAAGACCGGCAAGCTCTCTGACCGAACCTCCAAACCTATTGTTGATGAAGACACAGCCATGTTCGTCAACATGTCTCATGGGCTCAAGGAAGAAGGTAACAAACTCTCTCAAAAGAAGGATTACCAGGGAGCTATAACCAAGTATGATAAGGCCCTCAAGCTCCTTCCAAAAAACCACATAGAAATTGCTCTCCTCCGAAGCAATATGGCTTGGTGTTATATGCAAATGGGTCTTGGGGAATACCCCAAAGCAATCAATGAATGTAATTTAGCATTAGAAGTATCACCCAGATACAGCAAAGCTCTGTTGAGAAGAGCAAAGTGCTATGAAGAATTGAACCGTTTGGATTTGGCTCTGAGAGATGTTAATAGTGTTTTGAGCTGGGAACCCAATAACCTTCATGCATTGGAGATCATGGAGAGTTTGAAGAAGACAATGGAGGAGAAGGGCATCACTATTGATGAACAAACGATTGGTTTGGCTATTCCCGCCGGTGGTGGTGCTCGCTTGCGTAATGTGGTCAGAGAGAAACTAAAGAAAAAGAAAGGCAAAAAGAGAGACACAGAAAAGGCAGAGGATAAGGTCGTTGTTGCTGAGGAGAATCTGAATGCTGCAAAAACTGAAGAAATAGTGACAAAAACAATTGATAATGAAAAGCTGATTGAGGAACCTGTTAAGGAAGAAACAAAGGTAACGAGGACGGCCAAGTTGGTCCATGGAGAGGATATAAGGTGGGCACAGTTACCTGTAAATTGTAGTCTAAAATTGGTAAGGGACATTATTAGGGATCGCTTTCCAGGCTTGAAAGGCGTTCTTGTGAAATATAAAGATCAAGATAGCGATTTGGTCACAATCACTACCACTGAGGAACTAAGGTTAGCTGAATCTTCAGGTCATTTCCTGGGCTCGATTCGACTCCATATCATAGAAGTTGATCCAAGCCAGGAACCACCATCTTATGAAGAAATAGCCACTGAAAAAAAGGTGCCAACAGATGATGATGCTATCAAGCAAAATGGTCCTAGGGAAGAAGCCAAAGATCTTGTAACAAAAAGGACGACCACTGTGGAGGACTGGATTGTTCAATTTGCTAGGCTGTTTAAGAACCATGTTGGGTTTGATTCTGATGGATATTTGGATCTTCATGAGATAGGAATGACGCTGTACACAGAAGCAATGGAGGATAGCATAACAAGTGATGAAGCTGAAGAAATTTTTGATATTTCTATAGATAAATTTCAAGAGATGGCAGCTTTAGCCTTGTTTAACTGGGGGAATGTTCACATGTCCAAGGCGAGGAAGCGACCTGCCCTGTCAGAGGACGAGTCAAGTGAATCTTTTTTCGAGAACATTAAAGCTGCATACGAGTGGGCACAAAAGCAGTACAAGCTAGCAGAAAAGAGATACGAAGAAGCTGTGAAAATCAAACCAGACTTCTATGAAGGCTATCTTGCTCTTGGTCATCAACAATTTGAACAGTCAAAACTGTGTTGGTTCTATGCAATTGCATGCAAGAAGGAACTAGAATCAGAGCCTTCTGATGAGGTTTTACGACTCTATAACAAGGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAAATGGAGGAACAACGATTGAATGGATTGTCCAAATCAGAAAAATATAAAGCTCAATTGGAGAAAATGGGTTTGGATGGCATTTTTAAGGATGTTTCTTCTAATGAAGCTACAGAGCACGCTGACAACATGAGATCACAGATAAATCTTTTGTGGGGTACTTTATTGTATGAACGTTCTGTTGTAGAATATAAGTTAGGCCTACCAACATGGGAGGAATGTTTGGAGATTTCAGTTGAAAAGTTTGAACTTGCTGGAGCTTCTCAAACTGATATAGCAGTCATGATAAAAAATCATTGTTCCAATGTAACAGCACTGGAAGGTTGGGGGTTCAAAATTGATGAGATAGTACAGGCGTGGAATGAGATGTACGATGCTCAGAGGTGGCAATATGGAGTTCCATCGTTTAGACTTGAACCATTGTTTCGCCGGCGAGCCCCGAAACTTCACTACTTGTTGGAGCAATTTTGA 2142 0.4202 MGKPAGKKKDLSDHHKPANGNGKTGKLSDRTSKPIVDEDTAMFVNMSHGLKEEGNKLSQKKDYQGAITKYDKALKLLPKNHIEIALLRSNMAWCYMQMGLGEYPKAINECNLALEVSPRYSKALLRRAKCYEELNRLDLALRDVNSVLSWEPNNLHALEIMESLKKTMEEKGITIDEQTIGLAIPAGGGARLRNVVREKLKKKKGKKRDTEKAEDKVVVAEENLNAAKTEEIVTKTIDNEKLIEEPVKEETKVTRTAKLVHGEDIRWAQLPVNCSLKLVRDIIRDRFPGLKGVLVKYKDQDSDLVTITTTEELRLAESSGHFLGSIRLHIIEVDPSQEPPSYEEIATEKKVPTDDDAIKQNGPREEAKDLVTKRTTTVEDWIVQFARLFKNHVGFDSDGYLDLHEIGMTLYTEAMEDSITSDEAEEIFDISIDKFQEMAALALFNWGNVHMSKARKRPALSEDESSESFFENIKAAYEWAQKQYKLAEKRYEEAVKIKPDFYEGYLALGHQQFEQSKLCWFYAIACKKELESEPSDEVLRLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSEKYKAQLEKMGLDGIFKDVSSNEATEHADNMRSQINLLWGTLLYERSVVEYKLGLPTWEECLEISVEKFELAGASQTDIAVMIKNHCSNVTALEGWGFKIDEIVQAWNEMYDAQRWQYGVPSFRLEPLFRRRAPKLHYLLEQF 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0823 713 MobiDBLite consensus disorder prediction 1 20 - -
Alju08g0823 713 Coils Coil 210 230 - -
Alju08g0823 713 Gene3D Tetratricopeptide repeat domain 392 635 IPR011990 GO:0005515
Alju08g0823 713 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Alju08g0823 713 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
Alju08g0823 713 PANTHER PROTEIN CLMP1 1 711 IPR044517 -
Alju08g0823 713 Gene3D - 246 332 - -
Alju08g0823 713 SUPERFAMILY TPR-like 423 675 IPR011990 GO:0005515
Alju08g0823 713 SMART PB1_new 254 333 IPR000270 GO:0005515
Alju08g0823 713 SUPERFAMILY TPR-like 48 517 IPR011990 GO:0005515
Alju08g0823 713 MobiDBLite consensus disorder prediction 1 33 - -
Alju08g0823 713 Pfam PB1 domain 255 330 IPR000270 GO:0005515
Alju08g0823 713 CDD PB1 262 330 - -
Alju08g0823 713 Gene3D Tetratricopeptide repeat domain 44 179 IPR011990 GO:0005515
Alju08g0823 713 ProSiteProfiles PB1 domain profile. 254 333 IPR000270 GO:0005515
Alju08g0823 713 SMART tpr_5 121 154 IPR019734 GO:0005515
Alju08g0823 713 SMART tpr_5 85 120 IPR019734 GO:0005515
Alju08g0823 713 SMART tpr_5 47 80 IPR019734 GO:0005515
Alju08g0823 713 SMART tpr_5 468 501 IPR019734 GO:0005515
Alju08g0823 713 SUPERFAMILY CAD & PB1 domains 254 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0823 Alju-ChrAlju08 6204965 6207209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0823 51 170 Calmodulin-binding Proteins AT3G25230 32.558 1.52e-08 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2186 07 47955211 47957414 Alju08g0823 08 6204965 6207209 CCT