Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0342 ATGCCTCCCCTTACAGCCAGCGACTTGCAGCGAATATTTGAGAAGCTGGACATGAACGAGGATGGGTTGGTGAGCCTTGAAGAGCTGAAATGGCTGCTGGACAAGATAGGTTACGAGTTTAGCCCCGAGGAGCTCGAGTGTTTCGTCGGGAAACAGAGGCTGGACCTGAATGAATTCTTGCTCTTCTGGGAGTCCATATCGCAGCAGAACGGTAACAGAGGAGATGATGACTTGGATGGTGACCTGGCGAAGGCCTTCAGGGTGTTTGACTTGGACGGAGACGGCTTCATCACCAGCTCTGAACTGGAGTGCGTGCTGAAGAGGCTCCGCTTATGGGACGACCAGAACGGCAGGGACTGCTCCGCCATGATTTGCGCCTTCGACACCAACTCAGACGGCCGCCTTGATTTCCAGGAGTTCAAGAACATGATGCTCCTTACCTCTTCTTCCTGA 453 0.5364 MPPLTASDLQRIFEKLDMNEDGLVSLEELKWLLDKIGYEFSPEELECFVGKQRLDLNEFLLFWESISQQNGNRGDDDLDGDLAKAFRVFDLDGDGFITSSELECVLKRLRLWDDQNGRDCSAMICAFDTNSDGRLDFQEFKNMMLLTSSS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0342 150 SMART efh_1 8 36 IPR002048 GO:0005509
Alju08g0342 150 SMART efh_1 119 147 IPR002048 GO:0005509
Alju08g0342 150 SMART efh_1 81 109 IPR002048 GO:0005509
Alju08g0342 150 ProSitePatterns EF-hand calcium-binding domain. 90 102 IPR018247 -
Alju08g0342 150 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Alju08g0342 150 FunFam Calmodulin 1 6 147 - -
Alju08g0342 150 CDD EFh 84 144 IPR002048 GO:0005509
Alju08g0342 150 ProSitePatterns EF-hand calcium-binding domain. 128 140 IPR018247 -
Alju08g0342 150 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Alju08g0342 150 Pfam EF hand 9 30 IPR002048 GO:0005509
Alju08g0342 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 53 144 - -
Alju08g0342 150 Gene3D - 3 146 - -
Alju08g0342 150 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Alju08g0342 150 SUPERFAMILY EF-hand 8 146 IPR011992 -
Alju08g0342 150 ProSiteProfiles EF-hand calcium-binding domain profile. 77 112 IPR002048 GO:0005509
Alju08g0342 150 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0342 Alju-ChrAlju08 2483452 2483904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju08g0342 4 145 EF-hand Containing Proteins AT1G21550 47.297 1.22e-40 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2718 07 52694128 52694589 Alju08g0342 08 2483452 2483904 CCT
Alju08g0342 08 2483452 2483904 Alju08g0342 08 2483452 2483904 ECH