Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju08g0313 ATGCAAAAGCCTTTCATAAATGTTAGAGACAATTTGCCTTTCTCCTCTCGCCCTCTGCTCCCAGGTTTAATATCTTGTTTTCTCTCTGACTGTTTCGCATCAGTCTTGCACGCAATCGAGCTGTTCTTGGTAATAGCATTGCACGGCAAGATATCGTCGTTGTTTCTCTTCTCCAGCTGTAGTGGGCGTTTGAGCTTAAAAAGTGAAATGATTGGCAAGGAGAACCTGAAGACGGAGGACTTGAACTTATGCTTTGAGCAACTTATGATGGTTACAGGCGGTGGTAACGGTGGAAACAGTACTAGAGGAGTGAAAATGGAAGCTGGGGTGATCACCGAATGGAAGGATATTCCGGTGGAGCTTTTGATGCAGATTCTGTCCCTAACTGATAATCAGACGGTGATCGCAGCTTCTGGAGTCTGCCGTGGATGGAGAGATGCGGTTTGCTTCGCCCTTTCCCGTTTGTCACTCTCTTGGTGCAGGAAGAACATGAATAACTTGGTCCTATCGCTTATGCCTAAATTTACAAAACTACAAATTTTAGTCCTTCGTCAAGATAAACCTCAACTAGAAGATAATGCTGTTGAGACTATCTCAAATTTCTGTCACGACCTGCAGATGCTGGACCTCAGCAAAAGTTTCAGGCTTACTGATCGGTCTCTGTATGCCTTAGCCCATGGATGCCCTGATCTTACAAATCTGAACATCAGTGGGTGCTCGGCATTTAGCGATAGTGCTCTGGCATACCTAGCCAGTTTCTGCAGAAAATTGAAATGTTTAAATCTTTGTGGATGTGTTAGAGCAGCATCAGACAACGCATTACAGGCTTTAGGACGTTATTGCAACCAATTACAATTTTTGAACCTTGGATGGTGTGAAAATGTTGGTGATGATGGAGTGACAAGTTTAGCAGTTGGTTGCCCTGATCTTAGAACACTTGACTTGTGTGGTTGTATCCGTATAACAGATGAGAGTGTGATTGCTTTGGCAAACGGGTGTCCCCATCTGAGGTCCCTTGGGCTGTACTACTGTCAAAACATCACAGACAGAGCAATGTATTCATTGGCCCATAGCAAAGTGAATCACAGGATGTGGGGATCTGTGAAAGGAGTTAATGAAGAGGATGGGCTAAGAACTCTTAACATTAGCCAATGCACAGCACTCACACCCTCTGCTGTTCAGGCTGTGTGTGATTCCTTCCCGGCGCTTCACACCTGCTCTGGCAGGCATTCACTCATCATGAGTGGCTGTTTGAACCTGACCTCTGTGCATTGTGCTTGTGCTGTGCATTCGCATCGAGCAATGGCCTCTCTTCCATATCAAGCTCATTGA 1332 0.4535 MQKPFINVRDNLPFSSRPLLPGLISCFLSDCFASVLHAIELFLVIALHGKISSLFLFSSCSGRLSLKSEMIGKENLKTEDLNLCFEQLMMVTGGGNGGNSTRGVKMEAGVITEWKDIPVELLMQILSLTDNQTVIAASGVCRGWRDAVCFALSRLSLSWCRKNMNNLVLSLMPKFTKLQILVLRQDKPQLEDNAVETISNFCHDLQMLDLSKSFRLTDRSLYALAHGCPDLTNLNISGCSAFSDSALAYLASFCRKLKCLNLCGCVRAASDNALQALGRYCNQLQFLNLGWCENVGDDGVTSLAVGCPDLRTLDLCGCIRITDESVIALANGCPHLRSLGLYYCQNITDRAMYSLAHSKVNHRMWGSVKGVNEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAVHSHRAMASLPYQAH 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju08g0313 443 SUPERFAMILY F-box domain 106 149 IPR036047 GO:0005515
Alju08g0313 443 Pfam Leucine Rich repeat 307 330 IPR001611 GO:0005515
Alju08g0313 443 Pfam Leucine Rich repeat 281 304 IPR001611 GO:0005515
Alju08g0313 443 Pfam Leucine Rich repeat 333 356 IPR001611 GO:0005515
Alju08g0313 443 SUPERFAMILY RNI-like 149 357 - -
Alju08g0313 443 SMART LRR_CC_2 175 201 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 307 332 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 149 174 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 254 280 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 374 399 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 228 253 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 202 227 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 333 358 IPR006553 -
Alju08g0313 443 SMART LRR_CC_2 281 306 IPR006553 -
Alju08g0313 443 Gene3D Ribonuclease Inhibitor 149 364 IPR032675 -
Alju08g0313 443 FunFam F-box protein SKP2B 149 367 - -
Alju08g0313 443 Pfam F-box-like 115 148 IPR001810 GO:0005515
Alju08g0313 443 Gene3D - 113 148 - -
Alju08g0313 443 CDD F-box_AtSKP2-like 113 160 - -
Alju08g0313 443 PANTHER UNCHARACTERIZED 83 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju08g0313 Alju-ChrAlju08 2282324 2286217 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju07g2734 07 52821481 52824149 Alju08g0313 08 2282324 2286217 CCT
Alju08g0313 08 2282324 2286217 Alju08g0313 08 2282324 2286217 ECH