Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju05g1900 | ATGCTAAATACCCAAGTTAAGCCAAATTGTTTTACCTATACAAGTGTTATAAGTGCATGTGTGGAGCAAAAGGAAGCCCCTAAACAGTGTCCAACTCTCCATGCTCATGTTATCAGACAAGGATTTGATACTAGCAATTATGTGATAAGCTCTCTAATTTATTATTATGCAAAATGGGGACAACTTGATGATTCTGTATTATTATTTGGTGAAACGCATGAGAAGGATACTATTGTGTATGCCTCAATGATCAGTGGGTATTCTCAAAACCAGTATAACAAGGATGCCCTAGAACTTTTTGCAGAATTGAGGAAAAAGAATTTAGCTCCTTCAGATCATATGTTAAGTAGCATTTTAAATGCTTGTGGCAACCTTACAGTACTACTTCAAGGAAGACAATTGCACTCACTGATTATTAAAATGGGTTCTGAAAGCAACGTGTTTGTGGCCAGTGCTTTGATTGATATGTATTCAAAGGGCGGTGACATCGATGAGGCTCGTTGTGTGTTGGACCAGTCTTCTGAACAAAACACTGTTCTGTGGACTTGCATGATCATGGGTTATGCTCAGTGTGGGAGAAGTTCAGATGCTTTAATGCTTTTTGATAATTTATTAACTGAAAAAGGATTTGTTCCTGATCATGTTTGCTTTATTGCTGTGCTAACAGCTTGTAACCACGCAGGATTGCTTGACAAAGGTGTGGAGTACTTCAACCAAATGACAACAAATTATGGGATATCTCCCATTCTAGATCACTATGCTTGTTTGATAGATCTTTATGCAAGAAATGGAAATCTAAGGAAGGCAAAGGCTTTAGTGGAAGAAATGCCTTATGAACCAAATAATGTGATTTGTAGTTCCATTCTGAATTCCTGCAAAATTCATGGAGAAGTAGAGCTTGGAAGGGAGGCTGCTGATCAGCTCATAAAGATGGAACCAGGTAATGCTGTACCTTATATAACACTAGCACATATCTATGCAAGAAATGGTTTATGGACTGAAGCATCTGAAATCAGAAGCCTAATGAAACAAAGGAGATTAAGAGAACATGCAGGACGGAGATGTCTCTTCTTAAACACCACATGGGCTGCTGCATCTAATGGCTTCTTAGACAATGTCTTCTCGATCACATCAGAACGGAACTCATCTCTCTCGAACTCCTCCGGTTCTGCGATTCGTGTTTGCTCAAAGAGGTTTGATTGGCTGATAATAAACATGAATTTGCAACAAGTTGGGCAGCCCAAATCTTTTAATGGATATGGCCGCCGAAAATCTGAAAGAGAAGGAGCATTTAGGTCAGAGAATAAGAATCAGTCTGGAAAATCAAATGCCAGCAGATTAGCAAGTACAGTGACTGGCACTAAAGGTGATAATCATGAGAGTCCTTCACGTGATCGATTATTGTATATAGCAACTTGCCTCATTGGGCAACAGGTGGAAGTCCATGTGAAAAGCGGATCCATATACTCTGGAATTTTCCATGCAGCAAATGCTGACAAAGATTTTGGAATCATTTTGAAGATGGCTCGCTTGATGAAGGATAATTCTATTCGAGGGAAGAGGTCTGGTGTAGAATTTGTGAGCCAAGCTCCTTCAAAGACATTAATTATATCTGGAAAAGATCTTGTACAAATCATGGCAAAGGATGTTGCTGTTACTCGGGATGATTTTTGTGGTGAGGCTCACCATGAAGTGCATCAGGAGATTATGGTTGATTCAGCAATATCTCAATCTCATCATGTCGATTTGGAGAGAGAATTATTACCCTGGGTACCTGATGGAGATGATTCACAATGCCCCGAACTGGAAAATATATTTGATGGCCCTTGGAATAGAGGATGGGATCAGTTTGAGACAAACAAAACATTGTTCGGTGTAAAGAGTACATTCAATGAGGAATTATATACAACAAAGCTTGAAAAAGGGCCTCATATGAGGGAGTTGGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGCGAGGAAACCCGAGATCTTCATTCTGCAGAGGAAAGAGGTATACACCTACATGAAGACTTTGATATTGATGAGGAGACCAGATTCTCGTCAGTCTACAGGGGTAAAGGGGCTAATGACAGTGGACATGATGAAAAAGAGGATGTCCTAATAGATTCCCAGAATTTTGAAACATTTGGTGGTCCGTTTGCTTCAGTCATCAAGAAATCCAGTGATTTAGCCAGTGGAGAAGGCAATGAAGGAGCTCGATTATTATCAGATTCCTCCATTATGGATCTCCCTCATTCATCTCAGTCAAATATTGGCATGGATGTAAGCCGCTCTAGTTCTTATGATCCTGCTAAACAATTAGCATCTGAACTCCCTACCAAAAGTTACACATCTTTGGATGGAGAAAGGGTCCAGGATTCAATCATTGATCAATATGGAGCAAATGATAGTACCAAGGAAGAAAATCAGGTGCTGGCTGAGGATGATCCACCGTCAAAATCTGAGGATTCACAGTCATTGCTCAACTTGAAGAAAGATGGCTCTGATAAAGGAGAATTAAATGCCTCCTCTTGTGCTCCTTCATCTCATGTTTTATCAAGTACTCAAGAAAAGGCAGGGTCACCTGGAAATATAGTTGATAGTTCAGCTTCAGGCAAAGTGAATGCAGATACAAAGTCTGAGAGCTCCCATGGAAGACCAGGTAGTTCTGCTTCATCTGCTTCCGAGCGTGTGGGAGGTTTGACAGCATCTTCTGGTCCTGGCCTCTCACCAAGTTCTTCAGTTGGTTCATTATCGTCTGAAAGATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTCAACCCGAATGCAAGGAGTTTCGTTCCATCTCAAACACCTATTAGACCGCCCTCCCCAGTGTCTGATGCTTCATTCTATTTCCCACCTAATGTAACTAGTATGCCACATATGCCAACCATGTCCATTGGTGTTGGGATGGGACCCACATTTACGGGGCCACAACAGGCCATGTATAATCCACAGGTAGCTCAAGTGCCATTAACATATTTTCATCCAAATGGACAGTATGGGCAGCTTGTTGGTCATCCCAGGCAATTCATGTACATGCCACCAGGATACATACCTGAAACGCAGTATAGGGGACGGGATTATTAG | 3126 | 0.4101 | MLNTQVKPNCFTYTSVISACVEQKEAPKQCPTLHAHVIRQGFDTSNYVISSLIYYYAKWGQLDDSVLLFGETHEKDTIVYASMISGYSQNQYNKDALELFAELRKKNLAPSDHMLSSILNACGNLTVLLQGRQLHSLIIKMGSESNVFVASALIDMYSKGGDIDEARCVLDQSSEQNTVLWTCMIMGYAQCGRSSDALMLFDNLLTEKGFVPDHVCFIAVLTACNHAGLLDKGVEYFNQMTTNYGISPILDHYACLIDLYARNGNLRKAKALVEEMPYEPNNVICSSILNSCKIHGEVELGREAADQLIKMEPGNAVPYITLAHIYARNGLWTEASEIRSLMKQRRLREHAGRRCLFLNTTWAAASNGFLDNVFSITSERNSSLSNSSGSAIRVCSKRFDWLIINMNLQQVGQPKSFNGYGRRKSEREGAFRSENKNQSGKSNASRLASTVTGTKGDNHESPSRDRLLYIATCLIGQQVEVHVKSGSIYSGIFHAANADKDFGIILKMARLMKDNSIRGKRSGVEFVSQAPSKTLIISGKDLVQIMAKDVAVTRDDFCGEAHHEVHQEIMVDSAISQSHHVDLERELLPWVPDGDDSQCPELENIFDGPWNRGWDQFETNKTLFGVKSTFNEELYTTKLEKGPHMRELEKQALRIAREIEGEETRDLHSAEERGIHLHEDFDIDEETRFSSVYRGKGANDSGHDEKEDVLIDSQNFETFGGPFASVIKKSSDLASGEGNEGARLLSDSSIMDLPHSSQSNIGMDVSRSSSYDPAKQLASELPTKSYTSLDGERVQDSIIDQYGANDSTKEENQVLAEDDPPSKSEDSQSLLNLKKDGSDKGELNASSCAPSSHVLSSTQEKAGSPGNIVDSSASGKVNADTKSESSHGRPGSSASSASERVGGLTASSGPGLSPSSSVGSLSSERSTLNPNAKEFKLNPNARSFVPSQTPIRPPSPVSDASFYFPPNVTSMPHMPTMSIGVGMGPTFTGPQQAMYNPQVAQVPLTYFHPNGQYGQLVGHPRQFMYMPPGYIPETQYRGRDY | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju05g1900 | 1041 | MobiDBLite | consensus disorder prediction | 844 | 948 | - | - | |
| Alju05g1900 | 1041 | Pfam | E motif | 295 | 352 | IPR046848 | - | |
| Alju05g1900 | 1041 | MobiDBLite | consensus disorder prediction | 751 | 958 | - | - | |
| Alju05g1900 | 1041 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 20 | - | - | |
| Alju05g1900 | 1041 | MobiDBLite | consensus disorder prediction | 751 | 810 | - | - | |
| Alju05g1900 | 1041 | SUPERFAMILY | TPR-like | 53 | 338 | IPR011990 | GO:0005515 | |
| Alju05g1900 | 1041 | Gene3D | - | 472 | 549 | - | - | |
| Alju05g1900 | 1041 | Pfam | LsmAD domain | 624 | 694 | IPR009604 | - | |
| Alju05g1900 | 1041 | Gene3D | Tetratricopeptide repeat domain | 127 | 242 | IPR011990 | GO:0005515 | |
| Alju05g1900 | 1041 | MobiDBLite | consensus disorder prediction | 415 | 462 | - | - | |
| Alju05g1900 | 1041 | PANTHER | ATAXIN 2-RELATED | 434 | 1031 | IPR045117 | GO:0003723 | |
| Alju05g1900 | 1041 | Pfam | Ataxin 2 SM domain | 464 | 548 | IPR025852 | - | |
| Alju05g1900 | 1041 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 177 | 212 | IPR002885 | - | |
| Alju05g1900 | 1041 | SMART | LsmAD_2 | 624 | 695 | IPR009604 | - | |
| Alju05g1900 | 1041 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 76 | 110 | IPR002885 | - | |
| Alju05g1900 | 1041 | Pfam | Pentatricopeptide repeat domain | 76 | 124 | IPR002885 | - | |
| Alju05g1900 | 1041 | Pfam | PPR repeat | 216 | 241 | IPR002885 | - | |
| Alju05g1900 | 1041 | Pfam | PPR repeat | 179 | 204 | IPR002885 | - | |
| Alju05g1900 | 1041 | Pfam | PPR repeat | 151 | 172 | IPR002885 | - | |
| Alju05g1900 | 1041 | Pfam | PPR repeat | 253 | 277 | IPR002885 | - | |
| Alju05g1900 | 1041 | MobiDBLite | consensus disorder prediction | 811 | 841 | - | - | |
| Alju05g1900 | 1041 | Coils | Coil | 645 | 665 | - | - | |
| Alju05g1900 | 1041 | Gene3D | Tetratricopeptide repeat domain | 1 | 126 | IPR011990 | GO:0005515 | |
| Alju05g1900 | 1041 | MobiDBLite | consensus disorder prediction | 420 | 434 | - | - | |
| Alju05g1900 | 1041 | NCBIfam | pentatricopeptide repeat | 179 | 213 | IPR002885 | - | |
| Alju05g1900 | 1041 | NCBIfam | pentatricopeptide repeat | 253 | 276 | IPR002885 | - | |
| Alju05g1900 | 1041 | Gene3D | Tetratricopeptide repeat domain | 243 | 312 | IPR011990 | GO:0005515 | |
| Alju05g1900 | 1041 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 148 | 366 | - | - | |
| Alju05g1900 | 1041 | MobiDBLite | consensus disorder prediction | 435 | 457 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju05g1900 | Alju-ChrAlju05 | 51364751 | 51374537 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju05g1900 | 1 | 376 | Glycoside Hydrolase | AT3G49170 | 23.614 | 6.44e-22 | 100 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju11g0523 | 11 | 5633390 | 5642445 | Alju05g1900 | 05 | 51364751 | 51374537 | CCT | |
| Alju05g1900 | 05 | 51364751 | 51374537 | Alju05g1900 | 05 | 51364751 | 51374537 | ECH |