LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju03g2584	ATGTCGATGGCTCTGTTTCTCCTTGCTCTATTAATGGTGATGGTTCCTTCCGGCCATGCCTCGTGGCCACCTTCACCAGGCTACTGGCCAAGCTCTAGATTCAGGTCTCTGAGCTTCTACAGAGGATTTACAAACCTCTGGGGTCCTCAGCATCAAAGTCTAGACCAAAACACATTATCAGTTTGGCTCGATAGAACCTCAGGAAGTGGGTTCAAGTCGGTTCGTCCCTTTCGGTCCGGGTACTTTGGTGCTTCTATTAAGGTCCAACCGGGCTATACTGCAGGAGTTATCACAGCTTTCTACCTTTCGAACAACGAGGCACATCCAGGCTTCCACGATGAAGTGGACATAGAATTTCTGGGGACAACATTTGGAAAACCTTATACTCTTCAGACAAATGTGTACATAAGAGGGAGTGGTGACGGCAAAGTCGTAGGCAGGGAAATGAAGTTCCATCTATGGTTTGATCCCACCAAAGATTTTCATCACTACGCCATACTCTGGAGCCCTAAGGAAATAATATTCCTAGTGGATGATGTGCCGATAAGGAGGTACCCGAAGAAGAGTGATGCAACGTATCCAGTGAGGCCAATGTGGGTATATGGTTCGATATGGGATGCGTCGTCATGGGCAACTGAAGATGGAAAGTACAAAGCAGATTACAGATACCAACCATTTGTGGCCAAGTACAACAACTTCAAAGCCAGTGGTTGCTCAGCCTATGCGCCGATTTGGTGCCGGCCGGCCTCTGTTTCCCCCTACAGGTCCGGTGGGTTGAGCCGCCAGCAATATAGAGCAATGGGATGGGTTCAAAGATACCATATGGTTTATAACTATTGCAATGACTCAAAAAGAGACCACAGGCTAACGCCGGAATACAAGGGCGTTGAGTTCAGAGCATGTGGCGGCCGCCAATGCAAGCGTGAAGCAGTCAAGGCTACTCAGGATAGGAGAAGCAGCGAAGAGAAGCGCTTCTATGGGGATGATGATAAAGGGGATACCAGGGAGGAAGAAGATCAATATGAAGATGAAGGGGCTGGCAATAGACATGTTATGGAGACTGAGGATCAAGATGAGAAACAGACGCTTCTTGAACGTCCACCTCATGGATCAACGGTTTGCCTTGGTGGCATTCCTCGCAATGCTTCTGAAGTGTGTTTAAGGGACCTCTGTCGATCTGTGGGAGATGTATTTGAAGTTAAGATCATGAAGGGAAAAGAATCTGGTGGAGAGAAAGTTGATGCTTTCGTGACCTTCAGGACAAGAGAGATGGCTTCTGAGGCTATTAAGGATCTGAACAAGTCTGGCCTTCAGGCAAGTTTACGTGCTTATTTTCCTTTTCTTTTTTGTTTTAATATTTCAAGTGTTCTGAGTCACTGA	1380	0.4703	MSMALFLLALLMVMVPSGHASWPPSPGYWPSSRFRSLSFYRGFTNLWGPQHQSLDQNTLSVWLDRTSGSGFKSVRPFRSGYFGASIKVQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKVVGREMKFHLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPKKSDATYPVRPMWVYGSIWDASSWATEDGKYKADYRYQPFVAKYNNFKASGCSAYAPIWCRPASVSPYRSGGLSRQQYRAMGWVQRYHMVYNYCNDSKRDHRLTPEYKGVEFRACGGRQCKREAVKATQDRRSSEEKRFYGDDDKGDTREEEDQYEDEGAGNRHVMETEDQDEKQTLLERPPHGSTVCLGGIPRNASEVCLRDLCRSVGDVFEVKIMKGKESGGEKVDAFVTFRTREMASEAIKDLNKSGLQASLRAYFPFLFCFNISSVLSH	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju03g2584	459	Gene3D	-	304	440	IPR012677	-
	Alju03g2584	459	SUPERFAMILY	Concanavalin A-like lectins/glucanases	61	280	IPR013320	-
	Alju03g2584	459	Pfam	Glycosyl hydrolases family 16	42	222	IPR000757	GO:0004553\|GO:0005975
	Alju03g2584	459	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	375	435	IPR000504	GO:0003723
	Alju03g2584	459	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	257	291	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Alju03g2584	459	SMART	rrm1_1	372	444	IPR000504	GO:0003723
	Alju03g2584	459	MobiDBLite	consensus disorder prediction	311	331	-	-
	Alju03g2584	459	Gene3D	-	19	293	-	-
	Alju03g2584	459	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	371	433	IPR000504	GO:0003723
	Alju03g2584	459	FunFam	Xyloglucan endotransglucosylase/hydrolase	26	294	-	-
	Alju03g2584	459	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	18	230	IPR000757	GO:0004553\|GO:0005975
	Alju03g2584	459	SUPERFAMILY	RNA-binding domain, RBD	365	435	IPR035979	GO:0003676
	Alju03g2584	459	MobiDBLite	consensus disorder prediction	311	355	-	-
	Alju03g2584	459	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	37	286	IPR044791	GO:0004553

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju03g2584	Alju-ChrAlju03	52206209	52212274	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju03g2584	1	292	Glycoside Hydrolase	AT3G44990	66.096	1.15e-141	405

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju01g1484	01	11875181	11877529	Alju03g2584	03	52206209	52212274	CCT
	Alju03g2584	03	52206209	52212274	Alju03g2584	03	52206209	52212274	ECH